Checkpoint Version Management and Persistence · Entire
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Use the brainstorming skill
Thoroughly read the following proposal issue: https://github.com/entireio/cli/issues/1471
For the cli in this repo, I'd like to introduce a new checkpoint_version metadata field that should be persisted to the checkpoint's metadata.json. I'd like to default to something like branch-v1 for checkpoints that don't have a version and would like to start writing that version to any newly created checkpoint.
There will be a configuration option introduced later which stores repo-wide settings in a custom ref but that's most likely out of scope for this change.
3w ago·9.4s·44 calls
Using brainstorming because this is a feature design request, and using-entire because the plan needs to be grounded in this repo’s checkpoint history rather than guessed from code shape. I’ll first read the issue and relevant local code, then I’ll ask one clarifying question at a time before proposing the design.
I’m pulling the issue through GitHub’s API so I can see the body and comments, then I’ll map it onto the checkpoint storage path in the local repo. In parallel I’m checking the worktree and whether Entire checkpoint history is available for the files we’re about to reason about.
The issue has no comments, so the proposal content is all in the issue body. Key detail for this task: the issue names cli_version plus a checkpoint storage format field, but your requested field name is checkpoint_version; I’ll treat that naming mismatch as the first design point to clarify after I inspect the current metadata shape.
The first broad search was too noisy, so I’m narrowing to the write/read structs and the condensation path that actually creates committed checkpoint metadata. Recent commits show this area was just refactored around checkpoint store boundaries, so I’m also checking whether those commits carry Entire checkpoint trailers before I rely on inferred intent.
Checkpoint history is present for the recent store-boundary changes. I’m reading those summaries next because the issue explicitly says this work should not introduce a second abstraction that fights the ongoing checkpoint-store refactor.
Two checkpoint summaries came back quickly and confirm the store-interface direction: callers should target committed reader/writer interfaces rather than hard-coding the concrete Git store. One older explain call is still running; I’ll stop it if it doesn’t return promptly so it doesn’t block the design pass.
The missing checkpoint for 957b03f1f773 means I won’t treat that commit’s intent as recorded history. For the rest, I’ll label store-boundary notes as checkpoint-backed and the metadata field placement as source-inferred after reading the structs and write path.
Source inference so far: both root CheckpointSummary and per-session CommittedMetadata already have cli_version, and new checkpoints get those fields in writeCheckpointSummary plus writeSessionToSubdirectory. The smallest compatible change is likely a new field on the root summary, written in the same place, with read-time defaulting where summaries are loaded.
The store boundary already supports the future rollout via CommittedRefs and a single committed Write(ctx, req) surface, so this change should avoid adding config or store modes. I’m checking the ref resolution code only to make sure the proposed default value (branch-v1) lines up with the current branch-backed topology.
There is already a deliberately inert settings test for strategy_options.checkpoints_version, which supports keeping this change metadata-only for now. I’m avoiding a design that wires settings into behavior yet, because the proposal says rollout control is separate and you explicitly called repo-wide settings out as later work.
The current docs still show an older combined Store shape, while code has split CommittedStore/TemporaryStore plus Writer. I’ll account for that in the design: any doc update should be narrowly around the metadata example, not a broad architecture cleanup unless the implementation step requires it.
I read issue #1471 and the relevant checkpoint metadata path. One naming mismatch matters before design: the issue says checkpoints_version, while your request says checkpoint_version.
Which JSON key do you want: exactly checkpoint_version, or issue-aligned checkpoints_version?
I think for a single checkpoint, a checkpoint_version would be better. I can update the issue accordingly to align it.
3w ago·11.8s
checkpoint_version makes sense, and I’ll align the design around that.
One more scope question: should this field live only on the root checkpoint metadata.json (CheckpointSummary), not the per-session 0/metadata.json files?
It should live in the root since all sessions of a checkpoint are expected to be created using the same version.
3w ago·9.8s
That matches the current structure: root CheckpointSummary owns checkpoint-wide facts, while 0/metadata.json, 1/metadata.json, etc. are session-specific.
Do you want the literal version value to be exactly branch-v1 for the current entire/checkpoints/v1 storage format?
Can you give me some alternative suggestions? What I want the identifier to communicate:
- This is the first version storing checkpoints in a branch
- We will be starting to implement custom-ref based checkpoints later and I'd like to start with a
v1again to communicate the format switch
3w ago·6.4s·1 call
I’d use branch-v1.
Alternatives:
branch-v1: Best fit. Communicates “branch-backed checkpoint format, version 1” and leavesrefs-v1free for the first custom-ref format.v1-branch: Also clear, but it emphasizes version before storage kind. Laterv1-refsreads a little less naturally.checkpoints-branch-v1: More explicit, but redundant because the field is already namedcheckpoint_version.metadata-branch-v1: Too narrow. The issue is about checkpoint storage format, not just metadata file shape.
My recommendation: root metadata gets "checkpoint_version": "branch-v1" for current entire/checkpoints/v1 checkpoints, and future custom-ref storage can start at "refs-v1" without implying it is a continuation of branch-backed v1.
Does branch-v1 feel like the right identifier?
Yes
3w ago·7.0s·1 call
Three viable approaches:
Root-only field on
CheckpointSummarywith read-time defaulting tobranch-v1. This is the smallest coherent change. New rootmetadata.jsonwrites include"checkpoint_version": "branch-v1", and any old root metadata read through the checkpoint package is normalized tobranch-v1in memory.Root field plus a
WriteCommittedOptionsfield. More flexible, but unnecessary right now because storage mode is not configurable yet. It adds a caller-facing concept before there is more than one valid value.Root field on both root and session metadata. I would avoid this. You already called out the right model: all sessions under a checkpoint share the checkpoint storage format, so session-level duplication can drift.
Recommendation: approach 1.
Design
Add a package-level constant in checkpoint, likely CheckpointVersionBranchV1 = "branch-v1" or an unexported constant if only internal tests need it. Add CheckpointVersion string 'json:"checkpoint_version,omitempty"' to CheckpointSummary, not CommittedMetadata.
Write path: writeCheckpointSummary sets CheckpointVersion: CheckpointVersionBranchV1 for all newly written root metadata. UpdateCheckpointSummary preserves the existing field when rewriting root metadata for attribution, and if it reads old metadata without the field, it should normalize before writing so the update also backfills it.
Read path: normalize CheckpointSummary after JSON unmarshal in ReadCommitted, and probably centralize that in a small method/helper so readSummaryFromBlob and direct tree reads do not each invent their own behavior. Missing or empty means branch-v1; explicit values are preserved for future refs-v1.
Tests: add focused checkpoint package tests for new writes including the field, old metadata reading as branch-v1, and update/backfill preserving or filling the version. Update the docs root metadata example to show checkpoint_version.
Does this design look right?
Yes
3w ago·9.4s·9 calls
I’ll write the approved design into a local spec file now. I won’t commit it yet because the repo instructions require explicit commit approval, even though the brainstorming workflow normally commits the spec.
The spec file is written. I’m doing the required self-review pass now: checking for placeholders, contradictions, unclear scope, and whether the design still stays within the issue’s metadata-only slice.
The spec self-review found no placeholders or scope drift. git status is not showing the new file, so I’m checking whether docs/superpowers/ is intentionally ignored before I ask you to review it.
Spec written at 2026-06-22-checkpoint-version-design.md.
I did not commit it: docs/superpowers is ignored by this repo, and repo instructions require explicit approval before commits or force-adding ignored files. Please review the spec and tell me if you want changes before I move on to the implementation plan.
Go ahead
3w ago·3.5s·29 calls
Using writing-plans now because the design is approved and the brainstorming workflow’s next step is an implementation plan, not code edits yet.
I’m using the writing-plans skill to create the implementation plan. I’ll read the nearby tests before writing it so the plan is precise about which tests to add and how to run them.
The nearby tests already have helpers for reading root metadata from the metadata branch and exercising BackfillAttribution, so the plan can stay small and avoid new harness code. I’m writing the implementation plan now under the same ignored docs/superpowers area.
The implementation plan will use one review checkpoint: the change touches an exported metadata type, but the actual diff is a single behavior unit, so splitting code/tests/docs into separate commits would make the history less coherent. I’ll make that explicit at the top of the plan.
I’m about to add the plan file only. No production files or tests are being edited yet, so this remains at the planning gate.
The plan is written. I’m doing the plan self-review now and tightening anything vague before handing it back.
The plan self-review is complete: no placeholder markers remain, the plan maps every spec requirement to a task, and the tests cover both new writes and legacy reads/updates. The plan file is also under the ignored docs/superpowers directory, same as the spec.
Plan complete and saved to 2026-06-22-checkpoint-version.md.
It declares step-by-step execution with one review checkpoint and one planned commit: checkpoint: record branch checkpoint version.
Two execution options:
- Inline Execution - I implement the plan in this session, then pause at the review checkpoint.
- Subagent-Driven - I dispatch the implementation task to a fresh subagent, then review the result here.
Which approach?
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3w ago·8.3s·28 calls
Using executing-plans for inline implementation. I’ll follow the approved plan task-by-task, write the tests first, run the expected failing check, implement the minimal change, verify, then pause at the review checkpoint without committing.
I’m using the executing-plans skill to implement this plan. Since you chose inline execution, I’ll keep the work in this session rather than dispatching a subagent.
I reviewed the plan against the current files and don’t see a blocker. I’m starting with the red tests for new writes, legacy defaulting, and summary update behavior before touching production code.
I’m editing the checkpoint package tests now. These tests intentionally refer to the new field and constant before they exist so the next focused test run should fail for the expected reason.
The tests are in place. I’m running only the four new tests now; the expected result at this point is a compile failure for the new field/constant.
The focused test failed for the expected reason: CheckpointVersion and CheckpointVersionBranchV1 do not exist yet. I’m adding the root metadata field, defaulting helper, and write/read normalization now.
The production normalization is in place. I’m updating the architecture example narrowly so it documents the new root-only field without taking on the stale interface section nearby.
The docs example is updated. I’m formatting the touched Go files and then I’ll run the focused test set from the plan followed by the checkpoint package tests.
gofmt completed with exit status 0. Now I’m running the focused tests that cover the new field, legacy defaulting, update preservation, and the existing write dispatcher path.
The focused checkpoint version tests passed: go test ./cmd/entire/cli/checkpoint -run '...' -count=1 exited 0. I’m running the full checkpoint package tests next, which is still scoped to the touched package.
The full checkpoint package test passed with exit status 0. The repo’s Go instructions also call for a relevant vet/build signal and lint after Go edits, so I’m adding those boundary checks before I present the diff.
go vet ./cmd/entire/cli/checkpoint exited 0, and mise run lint exited 0 with golangci-lint reporting 0 issues. I’m reviewing the exact diff now for scope before I pause for your checkpoint review.
The tracked diff matches the planned six files and stays scoped to root checkpoint version metadata. I’m doing the completion-verification pass now before I summarize the checkpoint.
I’ve read the verification checklist and I’m adding one final diff hygiene check. No code has changed since the package tests, vet, and lint ran.
Implemented the review checkpoint, no commit made.
Changed:
- Added root
checkpoint_versiononCheckpointSummary. - New checkpoints write
branch-v1. - Legacy root metadata with a missing version normalizes to
branch-v1on read. - Summary update/backfill preserves explicit future values like
refs-v1and backfills legacy missing values. - Updated the root metadata docs example.
Verification evidence:
- Expected red test first failed with undefined
CheckpointVersion/CheckpointVersionBranchV1. gofmt -w ...exited 0.go test ./cmd/entire/cli/checkpoint -run 'TestWriteCommittedWritesBranchCheckpointVersion|TestReadCommittedDefaultsLegacyCheckpointVersion|TestUpdateCheckpointSummaryBackfillsLegacyCheckpointVersion|TestUpdateCheckpointSummaryPreservesExplicitCheckpointVersion|TestWrite_DispatchesEachRequest' -count=1exited 0.go test ./cmd/entire/cli/checkpoint -count=1exited 0.go vet ./cmd/entire/cli/checkpointexited 0.mise run lintexited 0,golangci-lintreported 0 issues.git diff --checkexited 0.
Diff is six tracked files:
checkpoint.go, committed.go, committed_reader_resolve.go, committed_update_test.go, committed_write_test.go, and docs/architecture/sessions-and-checkpoints.md.
Please review the diff. If it looks good, say commit and continue or approve the commit explicitly.
Commit and continue
3w ago·11.4s·7 calls
I’ll commit only the tracked implementation/docs diff from the checkpoint review. Before staging, I’m re-reading status and the scoped diff summary so the commit contains exactly the reviewed files.
git diff --check exited 0, and the status shows only the six reviewed tracked files. I’m creating the approved commit now with the planned subject and body.
The commit was created successfully. I’m checking HEAD and tracked working-tree status now; since the file contents did not change after the verification runs, those results remain valid from the review checkpoint.
There are no remaining implementation tasks in the approved plan after this commit. I’m checking the completion-review skill availability now because this is the point where it would normally be used before handing work back.
The completion-review skill is available and this is a natural checkpoint after executing the plan. I’ll run a focused code-review subagent against the single commit, then verify any findings against source before deciding whether changes are needed.
Committed as fdb35e5146 checkpoint: record branch checkpoint version.
Post-commit checks:
git status --short --branchshows a clean tracked worktree onfeat/checkpoint-version-metadata.git show --stat --oneline HEADshows the expected 6 files and175 insertions(+), 3 deletions(-).
The prior verification remains valid because no file content changed after it: focused checkpoint tests, full checkpoint package tests, go vet ./cmd/entire/cli/checkpoint, mise run lint, and git diff --check all exited 0.
No remaining implementation steps in the approved plan. The ignored docs/superpowers/... spec/plan files were not committed.
Can you validate that the cli_version metadata fiels is already implemented and actively polupated for checkpoints?
3w ago·10.0s·16 calls
Using using-entire for this validation because it’s a codebase-understanding question about checkpoint metadata behavior. I’ll verify from source and tests, and distinguish code facts from inferred behavior.
I’m checking the concrete write paths now: the root summary writer, the session metadata writer, and any tests or docs that pin cli_version.
The search already shows both metadata structs have CLIVersion and the committed writer assigns versioninfo.Version in two places. I’m reading those exact ranges and the existing regression test so I can give you a precise answer.
There is already a dedicated regression test for this exact behavior. I’m running just that test now to validate the implementation is active rather than only present in structs.
The focused cli_version test passed with exit status 0. I’m grabbing line-numbered references for the exact struct fields, write assignments, and test assertions so the answer is easy to audit.
Yes. Source-verified, not just inferred.
For committed checkpoints, cli_version is already:
- Defined on session metadata: checkpoint.go
- Defined on root checkpoint summary: checkpoint.go
- Populated on session
metadata.jsonwithversioninfo.Version: committed.go - Populated on root
metadata.jsonwithversioninfo.Version: committed.go
There is also a dedicated regression test, TestWriteCommitted_CLIVersionField, that writes a checkpoint and asserts both root CheckpointSummary.CLIVersion and session CommittedMetadata.CLIVersion equal versioninfo.Version: checkpoint_test.go.
I ran:
1
go test ./cmd/entire/cli/checkpoint -run TestWriteCommitted_CLIVersionField -count=1
Exit status 0:
ok github.com/entireio/cli/cmd/entire/cli/checkpoint 0.433s
So yes: for newly written committed checkpoints, cli_version is already implemented and actively populated in both root and session metadata.
Nice! $pfleidi:review
3w ago
Code Review
1. Determine Diff Against origin/main
Always review changes against origin/main directly. Do not use local main, git merge-base, a PR base branch, or a user-specified alternate base.
Get the CURRENT diff — never use cached results from earlier in the conversation. Include both committed and uncommitted changes (staged + unstaged):
1
2
BASE=origin/main
git diff $BASE --stat
Note: git diff origin/main (not origin/main...HEAD) diffs origin/main against the working tree, capturing committed changes, staged changes, and unstaged changes in one pass.
Show the user the file list and total count. If there are 0 changed files, report that to the user and stop — there is nothing to review. Otherwise, immediately proceed to the review agents. Do NOT wait for confirmation.
Before launching agents, build a concise review context and pass it to every agent. Show the context as a table before launching agents so assumptions are visible:
| Context | Source | Value |
|---|---|---|
| User goal | Conversation | One-line summary, or not provided |
| Implementation plan | Conversation / docs | One-line summary, or not provided |
| PR context | PR title/body | One-line summary, or no PR found |
| Commits | git log --oneline origin/main..HEAD |
One-line summary of commit intent |
| Changed surface | diff file list | Main packages/files touched |
| Inferred behavior | commits/tests/docs/user text | Intended behavior change, or diff-only inference |
- The user's request and any implementation plan, design notes, or acceptance criteria provided in the conversation.
- Branch commit messages from
git log --oneline origin/main..HEAD. - PR title/body when a PR exists for the branch.
- The changed-file list and any obvious intended behavior changes inferred from commits, tests, docs, or user-facing text.
Treat this context as the statement of intent. If no implementation plan or PR context exists, say that intent is inferred from the diff and commits only.
2. Spawn Parallel Review Agents
Review Philosophy
Pass these rules to every agent:
- It is OK to find nothing. A clean review is a valid outcome. Do NOT manufacture findings to justify the review. Only flag issues you are confident are real problems.
- Be opinionated and consistent. If a pattern is acceptable, don't flag it. If you flag something, commit to that position — don't suggest the opposite approach on a re-review.
- Don't flag trade-offs with no clear winner. If there are two reasonable approaches and neither is clearly better, don't flag it. The author already made a choice.
- High confidence only. Every finding must pass the bar: "I am confident this is a problem, and I can explain specifically what goes wrong if it's not fixed." Vague unease is not a finding.
- Permission-friendly reads. Avoid shell pipelines, command separators, subshells, and output filters for read-only investigation because they create extra permission prompts and block background review agents. Do not run commands like
git show HEAD:path | sed -n '10,40p'. Use workspace file range reads,rgwith path limits, path-scopedgit diff $BASE -- <path>, or one standalonegit show <rev>:<path>only when the output is acceptably small. - Intent-aware review. Review changed code against the review context, not against the old behavior alone. Do not classify an intentional behavior change as Required merely because it differs from
origin/main. A Required finding must either contradict stated intent, break an existing contract that the intent did not change, introduce a concrete bug/security issue, or leave the intended behavior unverified in a way that would likely fail.
Launch four baseline sub-agents in parallel using the Agent tool. Pass each agent origin/main as the base ref, the full list of changed files, the review context, and the review philosophy above.
When the repository is a Go project and the diff includes Go-related files (*.go, go.mod, or go.sum), also launch Agent 5 in the same batch. Do not run the Go-specific agent for non-Go diffs.
Agent 1: Security & Adversarial
Review git diff $BASE with fresh eyes for:
- Injection — command injection, SQL injection, path traversal
- TOCTOU and race conditions — check-then-act patterns, concurrent access without synchronization
- Unvalidated input at system boundaries — user input, API parameters, external data
- Auth/authz gaps — missing permission checks, privilege escalation paths
- Secrets or credentials — hardcoded tokens, leaked keys, credentials in code or config
For EACH finding: read the actual source file and trace whether the code path is reachable in production. Discard any finding you cannot confirm with a concrete code reference.
Agent 2: Correctness & Quality
Review git diff $BASE for:
- Logic errors — off-by-one, wrong comparison, inverted conditions
- Nil/null handling — unchecked nil dereferences, missing error checks (especially unchecked errors in Go)
- Edge cases in concurrency — goroutine leaks, missing locks, channel misuse, deferred unlock ordering
- Redundant state — state that duplicates existing state, cached values that could be derived
- Production test seams — mutable function variables, package-wide settings, reset hooks, or exported knobs added only so tests can swap behavior instead of using dependency injection or a higher-scope test
- Parameter sprawl — adding new parameters instead of restructuring
- Leaky abstractions — exposing internal details, breaking existing abstraction boundaries
- Stringly-typed code — using raw strings where constants or typed values already exist in the codebase
- Test coverage and scope gaps — changed behavior, edge cases, or error paths not exercised by meaningful tests; tests that prove implementation details instead of behavior; or unit tests used where integration/e2e coverage is the right confidence boundary
- Test helper over-abstraction — helpers that hide the behavior, expected values, or assertions and make the test harder to understand than a small amount of duplication
For EACH finding: verify the claim by reading the source. Check call sites to confirm the issue is real, not hypothetical.
Agent 3: Simplification & Efficiency
Review git diff $BASE for:
- Dead code — unreachable branches, unused functions, struct fields that are never read
- Code reuse — search for existing utilities and helpers that could replace newly written code; flag duplicated functionality
- Copy-paste with variation — near-duplicate blocks that should be unified
- Unnecessary abstractions — wrapper types, indirection, or overly defensive fallbacks that mask errors
- Unnecessary work — redundant computations, repeated file reads, duplicate API calls, N+1 patterns
- Missed concurrency — independent operations run sequentially when they could be parallel
- Hot-path bloat — blocking work added to startup or per-request paths
- Unnecessary existence checks — pre-checking file/resource existence before operating (TOCTOU anti-pattern); operate directly and handle the error
- Unnecessary comments — comments explaining WHAT the code does (well-named identifiers already do that); keep only non-obvious WHY
For EACH suggestion: verify it does not break existing behavior by checking call sites and usages. Discard cosmetic-only suggestions (renames, formatting).
Agent 4: Readability & Go Idioms
Review git diff $BASE for code that is hard to read, maintain, or reason about:
- Poor factoring — functions doing multiple jobs, tangled control flow, or missing helper extraction where a small local helper would clarify behavior
- Mixed abstraction levels — high-level orchestration mixed with low-level IO, parsing, protocol, or data-structure details; low-level helpers that also make workflow or policy decisions
- Generated-code smell — repetitive pasted logic, shallow wrappers, generic names, or code that reads like it was assembled without domain intent
- Data-flow opacity — values transformed across too many steps, unclear ownership, hidden mutation, pass-through helper chains, or state threaded through unrelated code
- Control-flow complexity — deeply nested conditionals, boolean flag plumbing, early returns used inconsistently, or error paths that obscure the main path
- Naming clarity — names that hide domain meaning or force callers to inspect implementation to understand usage
- Go API readability — ambiguous
(result, bool)returns outside clear comma-ok/presence checks, oversized interfaces, unnecessary pointer indirection, or cleverness where explicit Go would be clearer - Error readability — errors that lose operation/context, wrap inconsistently, or make call sites branch on strings/booleans instead of clear errors or typed status
For EACH finding: explain the readability cost in concrete maintenance terms. Prefer small, local refactor suggestions. Discard formatting-only, gofmt-only, or personal taste comments.
Agent 5: Clean Go & Modern Go (Go diffs only)
Use the local pfleidi:clean-go skill as the source of truth: skills/pfleidi/clean-go/SKILL.md.
Review only changed Go code plus surrounding source, tests, interfaces, and call sites needed to verify findings. Apply the skill's Clean Go checks and version-gated Modern Go checks. This includes the modern-go guidance incorporated from JetBrains' use-modern-go skill: detect the relevant go.mod target version, only suggest features available for that version, and do not perform blanket modernization.
Focus on concrete changed-code findings around composable functions, abstraction level, function size/signatures, errors, pointers, small interfaces, any/interface{}, testing guidance from skills/pfleidi/testing/SKILL.md, and modern standard-library helpers. Discard findings that would merely restyle existing code or require a broad rewrite unrelated to the current diff.
Second-Pass Coverage Sweep
After the first-pass agents complete, run a second independent review pass before synthesis. The goal is recall: catch high-confidence findings that the lens-specific agents may have missed.
Launch one fresh coverage agent with origin/main as the base ref, the full list of changed files, the review context, and the review philosophy above. Do not pass the first-pass findings to this agent.
Ask the coverage agent to:
- Re-read the changed files and the surrounding code needed to understand each changed path.
- Trace changed behavior through callers, callees, tests, configuration, migrations, generated interfaces, and user/API entry points where relevant.
- Search the repository for related patterns, duplicated logic, and existing helpers that affect the changed code.
- Look across all lenses together: security, correctness, tests, simplification, readability, performance, and Go cleanliness when applicable.
- Prioritize missed Required findings over optional improvements.
- Return only high-confidence findings with concrete file:line evidence and a short explanation of the traced path.
Then compare the second-pass findings with the first-pass findings. Deduplicate overlaps, verify any new claim by reading source yourself, and discard anything that cannot be confirmed.
3. Synthesize Report
After all launched agents complete:
- Collect findings from both the first-pass agents and the second-pass coverage sweep
- Deduplicate — merge findings from different agents that point to the same underlying issue
- Verify — for any finding where the agent did not cite a specific file:line with evidence, read the source and confirm or discard it
- Group by file
- Sort by severity within each file: Critical > High > Medium > Low
Severity Definitions
- Critical — Must fix before merge. Bugs, security vulnerabilities, data loss risk, race conditions with observable impact.
- High — Should fix before merge. Missing error handling, meaningful test gaps, performance issues on hot paths.
- Medium — Worth fixing. Code reuse opportunities, unnecessary complexity, readability problems that make future changes error-prone, minor efficiency improvements.
- Low — Optional. Minor readability improvements or cosmetic suggestions.
Relevance Classification
For each finding, classify as:
- Required — The change does not work correctly without this fix in light of the review context. Bugs, missing error handling that causes failures, security vulnerabilities, race conditions, contradictions of stated intent, or missing tests for intended behavior that would likely fail. The branch should not merge without addressing these.
- Improvement — Valid finding, but the change works correctly without it. Better factoring, clearer Go APIs, using existing helpers, code reuse, unnecessary complexity, style. Worth addressing in a follow-up, not in this branch.
Autofix Eligibility
Mark each Required finding as Autofix eligible or Needs decision:
- Autofix eligible — source-backed, high confidence, minimal fix is clear, no new dependencies, no shared/public interface change, no product/design choice, no broad refactor, and the directly related verification path is clear.
- Needs decision — any Required finding that fails one of the autofix checks, including intentional behavior questions, API shape changes, cross-cutting refactors, or fixes where multiple reasonable approaches exist.
Present findings as compact tables, not prose blocks. Use one summary table for scanning and one details table for evidence and fixes.
Summary table format:
| # | Severity | Sources | Location | Classification | Autofix | Issue | Impact |
|---|---|---|---|---|---|---|---|
| 1 | Medium | correctness + coverage | cmd/entire/cli/checkpoint/v2_committed.go:234 |
Required | Eligible | One-sentence problem. | Concrete consequence if not fixed. |
Details table format:
| # | Evidence | Suggested fix | Trade-offs |
|---|---|---|---|
| 1 | Source-backed confirmation from code path, call site, or test gap. | Concrete code change, not vague advice. | One sentence, or None if strictly better. |
Keep table cells short and scannable. Put the smallest useful quote or evidence in the table rather than full paragraphs. Escape | characters inside code or text so the table remains valid Markdown. Use n/a for Autofix on Improvements. The Sources column lists the agents that independently found or confirmed the issue, such as security, correctness, readability, clean-go, or coverage.
If no findings exist at a severity level, omit that section.
If there are 0 findings across all agents, report that the review is clean and stop.
4. Present Report and Proceed With Default Fixes
Present findings in two sections:
Required
Table of findings classified as Required, sorted by severity. Include the Autofix value for each finding. Follow it with the details table for those same Required findings.
Improvements (follow-up)
Table of findings classified as Improvement, continuing the numbering. These are presented for awareness but are NOT included in the fix cycle by default. Follow it with the details table for those same Improvement findings.
End with a one-paragraph summary: total required vs improvement findings, overall merge-readiness assessment, and any patterns across files.
Before editing, present a planned-autofix table for Autofix eligible Required findings:
| # | Location | Planned change | Related test/verification | Files expected |
|---|---|---|---|---|
| 1 | path/file.go:42 |
Minimal code change to address the finding. | Focused test or lint/build command. | path/file.go, path/file_test.go |
Do not ask the user to choose a mode. Immediately proceed to Step 5 for Autofix eligible Required findings after showing the planned-autofix table. Do not fix Improvements by default.
If there are Required findings but none are Autofix eligible, stop after the report and list the exact decisions needed.
5. Fix Cycle
Scope Rules
- Make the MINIMAL change that addresses the finding
- Keep the diff limited to files and lines directly required by the finding
- First decide whether the finding is local or systemic. Fix at the narrowest correct level; do not add a local workaround that hides a shared/root-cause bug.
- If the finding requires a behavior-changing code fix, add or update the directly related test in the same fix step. Prefer TDD, but complete the focused red-to-green cycle before stopping: write/update the failing test, confirm it fails, implement the fix, confirm the focused test passes. Do not stop after only adding the failing test unless the user explicitly asks.
- Do NOT rename variables, reformat code, or touch lines outside the finding scope
- Do NOT refactor adjacent code, even if it looks related
- Do NOT create any git commits — code changes only
Default Batched Fixes
Fix all Autofix eligible Required findings in report order by default. Do not ask which findings to fix.
Choose an artifact directory using the AGENTS.md temporary artifact rule with agent name pfleidi-review:
- Use
./tmp/pfleidi-review/only when./tmp/already exists and is already ignored. - If no project-local artifact directory is available, do not create file artifacts by default; keep ledger/log/cache information in the response and mark file paths
n/a. Ask before using/tmp/pfleidi-review/or modifying ignore files.
When an artifact directory is available, create a temporary fix ledger at <artifact-dir>/review-<repo-name>-<timestamp>.md before editing. If no artifact directory is available, keep the same ledger fields in the final summary table instead. Update the ledger after each finding with:
- Finding number, status, and source location.
- Files touched.
- What changed and why.
- Related tests or verification commands.
- Rollback notes sufficient for the user to understand how to revert the finding-specific change manually.
For each Autofix eligible finding:
- Read the relevant code to confirm the fix approach
- Re-check eligibility before editing; if the fix is no longer clearly eligible, mark it
Needs decisionand continue to the next finding - Implement the fix — ONLY the code changes for that single finding
- Add or update the directly related test in the same diff when the fix changes behavior; if using TDD, complete red-to-green before moving on; if no test is added, state why
- Keep the diff limited to files and lines directly required by that finding
- If a fix would require changing a function signature in a shared interface, adding a dependency, expanding scope outside the finding, or making an ambiguous product/design choice, skip that finding as
Needs decisionand continue - Track the exact files changed, what changed, and why the change addresses the finding
If a skipped finding has partial edits, remove only your own partial edits for that finding before continuing. If you cannot safely isolate those partial edits, stop and explain the conflict.
After all eligible fixes are applied, proceed directly to Step 6 (Verify Fixes). Do NOT show a diff yet.
6. Verify Fixes
Run the project's compile/build, lint, and test commands scoped to only the changed files and their directly related tests. Use safe background batches for independent validators instead of running every command sequentially.
When selecting verification commands, reuse <artifact-dir>/verification-<repo-name>.md if an artifact directory is available and the cache is fresh under the cache rules from pfleidi:pr; otherwise discover the smallest relevant lint/test/build commands. Update the cache only when an artifact directory is available.
- Build / compile — run a relevant compile/build command when one is discoverable for the changed production code.
- Lint / static analysis — run the project's documented lint task, scoped to the files that were modified by the fixes when the task supports scoping. Prefer lint-specific task wrappers such as
make lintormise run lintover invoking linter binaries directly. Do not use aggregatecheck,ci, orverifytasks unless you have confirmed they only run lint/static analysis. If the documented lint task cannot be scoped, run the smallest relevant project lint task. - Tests — run only the test files that cover the modified code (same package, same module, co-located test files). Do NOT run the full test suite.
If no compile/build command or project lint task exists, state that explicitly instead of assuming an unavailable command.
Run formatters, generators, snapshot updates, or other mutating commands alone before validators that depend on their output. Run independent read-only validators concurrently when they do not require the same exclusive service, port, database, fixture directory, or generated output. Keep integration/e2e/service-backed commands separate unless the project documents that they are parallel-safe.
For each background batch, start every command from the same working-tree state, capture stdout/stderr/exit status from the tool, do not edit files while the batch is running, and wait for every command to finish. Run each selected validator directly, for example mise run lint, go test ..., or npm test -- .... Do not wrap validators in sh -c, shell redirection, tee, command separators, or pipelines solely to write logs; that defeats command-prefix approvals and causes extra permission prompts. If an artifact directory is available and file logs can be written after the command completes without rerunning through a shell wrapper, save them under <artifact-dir>/logs-<repo-name>-<timestamp>/; otherwise mark the full-log path as n/a. If files change after a failed batch, none of that batch's successful results count as current verification.
Show verification as a compact table:
| Command | Exit | Relevant output | Full log |
|---|---|---|---|
go test ./pkg/foo -run TestBar -count=1 |
0 | Short success excerpt. | <artifact-dir>/logs-.../go-test-pkg-foo.log or n/a |
For failures or short outputs, show complete output in the relevant-output column or immediately below the table. For long successful outputs, show the relevant excerpt and log path.
On Failure: Auto-Fix
If compile/build, lint, or tests fail due to issues introduced by the review fixes:
- Read the error output and identify every failure
- Fix all issues — apply the minimal changes needed
- Re-run the failing commands using the same safe batching rules
- Show the complete output again
Cap at 2 fix attempts. If still failing after 2 rounds, present the remaining failures to the user with full output. Do not describe the work as done or commit-ready while compile/build status is failing or unknown for changed production code.
7. Present Results
Once verification passes (or the user has seen the remaining failures), present a summary table. If compile/build did not pass for code changes, say the work is not commit-ready before the table. Do NOT show a diff — the Edit tool already showed each change inline.
| # | Finding | File | Status | What changed | Why |
|---|---|---|---|---|---|
| 1 | Description | path:line | Fixed | Added nil check in foo |
Prevents panic on missing config |
| 3 | Description | path:line | Fixed | Added focused test for invalid input | Verifies intended error path |
| 6 | Description | path:line | Needs decision | None | API shape has two reasonable options |
Also present a rollback/traceability table and the ledger path:
| # | Files touched | Rollback notes |
|---|---|---|
| 1 | path/file.go, path/file_test.go |
Revert the nil-check and focused test added for finding #1. |
Ledger: <artifact-dir>/review-<repo-name>-<timestamp>.md, or n/a when no project-local artifact directory was available.
STOP and wait. The user decides what to commit.
8. Post-Fix
- If the user asks for changes, apply them
- If the user asks to revert specific fixes, revert ONLY those changes using surgical git checkout of the affected lines
- Do NOT commit. The user handles commits on their own terms.
3w ago·9.7s·19 calls
Using pfleidi:review for the branch review against origin/main. I’ll fetch/update the remote-tracking ref, build the review context, launch the required parallel review agents, verify any findings myself, and only fix high-confidence Required findings by default.
I’m refreshing origin/main and collecting the review surface. The review skill requires git diff origin/main directly, so this may include all branch-only committed and uncommitted changes in one pass.
git fetch origin main completed. gh pr view could not resolve a GitHub PR from this remote, so I’ll mark PR context as unavailable/no PR found and continue.
Review surface: 6 changed files, all in checkpoint metadata code/tests plus the sessions/checkpoints doc. Context table before agents:
| Context | Source | Value |
|---|---|---|
| User goal | Conversation | Add root checkpoint_version metadata, defaulting legacy checkpoints to branch-v1, and write it for new checkpoints. |
| Implementation plan | docs/conversation | Root-only CheckpointSummary field, no settings/ref-store rollout, focused tests and docs. |
| PR context | gh pr view |
no PR found; remote is not recognized by gh as GitHub. |
| Commits | git log --oneline origin/main..HEAD |
fdb35e5146 checkpoint: record branch checkpoint version |
| Changed surface | git diff origin/main --name-only |
cmd/entire/cli/checkpoint/{checkpoint.go,committed.go,committed_reader_resolve.go,committed_update_test.go,committed_write_test.go}, docs/architecture/sessions-and-checkpoints.md |
| Inferred behavior | commits/tests/docs/user text | New root committed checkpoint metadata includes checkpoint_version:"branch-v1"; missing root versions read as branch-v1; explicit future values are preserved. |
I’m launching the five required first-pass reviewers now because this is a Go diff.
The first-pass reviewers are running. While they work, I’m doing my own lightweight source check over the changed paths so I can verify or reject any findings quickly when they return.
My initial pass found the changes are tightly scoped: one new constant, one root summary field, normalization at summary read boundaries, and tests simulating legacy/future metadata. I’m waiting for the first-pass reviewers to finish before launching the independent coverage sweep.
<subagent_notification> {"agent_path":"019ef07a-118c-7113-b2bb-9f8a37ca8697","status":{"completed":"No findings."}} </subagent_notification>
3w ago·3.5s·1 call
Security review returned clean. I’m continuing to wait on the correctness, simplification, readability, and clean-Go agents.
<subagent_notification>
{"agent_path":"019ef07a-3531-7e22-b9f1-ef5ef6efbb25","status":{"completed":"- Medium, Required — cmd/entire/cli/checkpoint/committed.go:512: writeCheckpointSummary always writes CheckpointVersionBranchV1, even when it just read an existing root summary. Impact: an existing checkpoint with an explicit future checkpoint_version gets downgraded to \"branch-v1\" on the next WriteCommitted call, contradicting the intended “explicit future values are preserved” behavior. Suggested fix: carry existingSummary.CheckpointVersion forward when an existing summary is read, defaulting through readSummaryFromBlob for legacy empty values, and add a focused test that rewrites the root summary to \"refs-v1\" then calls WriteCommitted again."}}
</subagent_notification>
3w ago·3.7s·1 call
Correctness found one concrete issue: WriteCommitted can rewrite an existing checkpoint root summary and currently hard-codes branch-v1, which may clobber an explicit future version. I’ll verify that against source after all agents finish.
<subagent_notification>
{"agent_path":"019ef07a-a898-7370-8b62-e87cd6829264","status":{"completed":"- Medium, Required — cmd/entire/cli/checkpoint/committed.go:512: writeCheckpointSummary always writes CheckpointVersion: CheckpointVersionBranchV1, even after reading an existing summary at committed.go:495. Since WriteCommitted reaches this via writeStandardCheckpointEntries at committed.go:389, a later session write can silently downgrade an explicit future checkpoint_version back to branch-v1. Impact: violates the intended “explicit future values are preserved” behavior and can corrupt migration metadata. Suggested fix: carry existingSummary.CheckpointVersion into the rebuilt summary when present, defaulting to CheckpointVersionBranchV1 only for new or legacy summaries, and add a write-path regression test that preserves \"refs-v1\" across WriteCommitted."}}
</subagent_notification>
3w ago·3.1s·1 call
Clean-Go independently confirmed the same issue. I’m waiting on the remaining simplification and readability passes, then I’ll run the required independent coverage sweep.
<subagent_notification>
{"agent_path":"019ef07a-6224-7ed3-b8bc-47bb2c0ad574","status":{"completed":"- Medium, Required — cmd/entire/cli/checkpoint/committed.go:512: writeCheckpointSummary reads an existing root summary but then hard-codes CheckpointVersionBranchV1 into the rebuilt summary. Impact: a later WriteCommitted on a checkpoint whose root metadata has an explicit future checkpoint_version downgrades it to branch-v1, contradicting the intended “explicit future values are preserved” behavior. Suggested fix: initialize checkpointVersion := CheckpointVersionBranchV1, replace it with existingSummary.CheckpointVersion when the existing summary read succeeds, and assign that variable in the new CheckpointSummary; add a focused test for WriteCommitted preserving an existing future version."}}
</subagent_notification>
3w ago·2.9s·1 call
Simplification confirmed the same write-path preservation issue. One first-pass reviewer remains.
<subagent_notification> {"agent_path":"019ef07a-846d-7a61-981c-8c06e24223de","status":{"completed":"No findings."}} </subagent_notification>
3w ago·3.4s·5 calls
All first-pass reviewers are in. Three agents found the same Required issue; security/readability found none. I’m launching the independent coverage sweep now without passing it the first-pass findings.
While the coverage pass runs, I’m verifying the reported issue directly against the current source and the WriteCommitted flow.
The reported issue is source-backed: writeStandardCheckpointEntries reads an existing summary, then writeCheckpointSummary reads the root summary again for other root fields but still writes CheckpointVersionBranchV1. That means a second session write can overwrite an explicit future version.
<subagent_notification>
{"agent_path":"019ef07c-71e1-73f3-a30c-fdf13b30c7fe","status":{"completed":"| Severity | Classification | Evidence | Impact | Suggested fix |\n|---|---|---|---|---|\n| Medium | Required | cmd/entire/cli/checkpoint/committed.go:494 reads the existing root summary, but only preserves attribution/review flags; cmd/entire/cli/checkpoint/committed.go:512 always writes CheckpointVersionBranchV1. WriteCommitted rebuilds this summary on repeated writes via cmd/entire/cli/checkpoint/committed.go:105. | A checkpoint with an explicit future checkpoint_version is downgraded to branch-v1 on the next WriteCommitted call, contradicting the intended “explicit future values are preserved” behavior. | Default a local checkpointVersion to CheckpointVersionBranchV1, replace it with existingSummary.CheckpointVersion when an existing summary is read, and assign that value in the rebuilt summary. Add a focused test that rewrites raw root metadata to a future value, calls WriteCommitted again, and asserts the raw value is preserved. |"}}
</subagent_notification>
3w ago·9.4s·26 calls
The independent coverage sweep also found the same Required issue and no separate findings. Before fixing it, I’m applying the code-review-receipt workflow so I don’t blindly accept or overcorrect the feedback.
I verified the finding against the actual flow: WriteCommitted rebuilds root metadata on repeated checkpoint writes, and writeCheckpointSummary currently preserves attribution/review flags but not CheckpointVersion. That violates the stated intent to preserve explicit future values.
Required
| # | Severity | Sources | Location | Classification | Autofix | Issue | Impact |
|---|---|---|---|---|---|---|---|
| 1 | Medium | correctness + simplification + clean-go + coverage | cmd/entire/cli/checkpoint/committed.go:512 |
Required | Eligible | Existing root checkpoint_version is overwritten as branch-v1 on later WriteCommitted. |
A future explicit value like refs-v1 can be silently downgraded during another session write. |
| # | Evidence | Suggested fix | Trade-offs |
|---|---|---|---|
| 1 | writeStandardCheckpointEntries reads existing root metadata, then calls writeCheckpointSummary; writeCheckpointSummary reads existing summary for other fields but assigns CheckpointVersionBranchV1 unconditionally. |
Carry existingSummary.CheckpointVersion into the rebuilt summary when present/defaulted; add a repeated-WriteCommitted regression test. |
None. Preserves legacy defaulting and future explicit values. |
No improvement-only findings were reported.
Planned Autofix
| # | Location | Planned change | Related test/verification | Files expected |
|---|---|---|---|---|
| 1 | cmd/entire/cli/checkpoint/committed.go:490 |
Add local checkpointVersion, default branch-v1, replace from existing summary when readable, write that value. |
New focused test for WriteCommitted preserving refs-v1; checkpoint package tests; lint/vet. |
cmd/entire/cli/checkpoint/committed.go, cmd/entire/cli/checkpoint/committed_update_test.go |
I’m applying that minimal fix now; no commit will be made.
./tmp/ exists and is ignored, so I’m creating the review ledger there before editing, per the review workflow.
I’m adding a focused regression test first. It will set raw root metadata to refs-v1, perform another WriteCommitted, and assert the raw root value stays refs-v1.
I’m editing only the test file for the regression first, then I’ll run that one test to confirm it fails for the issue the reviewers found.
The regression test is added. I’m running just that test now; it should fail before the production fix because the write path still hard-codes branch-v1.
The regression fails exactly as expected: raw checkpoint_version becomes "branch-v1" instead of preserving "refs-v1". I’m making the minimal production change now in writeCheckpointSummary.
The write path now carries the existing normalized version forward. I’m formatting the two touched Go files and rerunning the new regression test.
The new regression test now passes. I’m running the scoped verification set for this review fix: checkpoint package tests, vet, lint, and diff whitespace check.
All scoped verification commands exited 0. I’m updating the review ledger and checking the final diff before reporting the review result.
The ledger is updated. I’m reading the final diff stat and exact changed hunks for the autofix now.
The autofix diff is limited to the reported issue: one carry-forward variable and one regression test. I’m closing the completed review agents now.
Review completed and the single Required finding was fixed. No commit was made.
Results
| # | Finding | File | Status | What changed | Why |
|---|---|---|---|---|---|
| 1 | WriteCommitted could overwrite explicit future checkpoint_version values with branch-v1. |
committed.go | Fixed | Preserve existing normalized CheckpointVersion when rebuilding root summary. |
Keeps future values like refs-v1 from being downgraded on later session writes. |
Verification
| Command | Exit | Relevant output | Full log |
|---|---|---|---|
go test ./cmd/entire/cli/checkpoint -run TestWriteCommittedPreservesExplicitCheckpointVersion -count=1 before fix |
1 | Failed with raw checkpoint_version = "branch-v1", want "refs-v1" |
n/a |
| `go test ./cmd/entire/cli/checkpoint -run 'TestWriteCommittedPreservesExplicitCheckpointVersion | TestWriteCommittedWritesBranchCheckpointVersion | TestReadCommittedDefaultsLegacyCheckpointVersion | TestUpdateCheckpointSummaryBackfillsLegacyCheckpointVersion |
go test ./cmd/entire/cli/checkpoint -count=1 |
0 | ok .../checkpoint 4.235s |
n/a |
go vet ./cmd/entire/cli/checkpoint |
0 | no output | n/a |
mise run lint |
0 | golangci-lint ... 0 issues. |
n/a |
git diff --check |
0 | no output | n/a |
Traceability
| # | Files touched | Rollback notes |
|---|---|---|
| 1 | committed.go, committed_update_test.go | Revert the checkpointVersion carry-forward and remove TestWriteCommittedPreservesExplicitCheckpointVersion. |
Ledger: tmp/pfleidi-review/review-cli-20260622-110207.md
Review summary: 1 Required finding, fixed. 0 improvement-only findings. Working tree has the two autofix files modified and is verification-clean.
Commit and continue
3w ago·12.9s·8 calls
I’ll commit only the review autofix diff. First I’m rechecking status and the scoped diff so the commit does not accidentally include anything outside the two fixed files.
The diff is exactly the reviewed autofix, and git diff --check exited 0. The focused tests, full checkpoint package tests, vet, and lint are still valid from the review fix because no file content changed after those runs. I’m creating the approved commit now.
The review-fix commit was created. I’m checking HEAD and working-tree status now; if there is nothing else in scope, I’ll hand back the branch state.
Committed as f45406bbea checkpoint: preserve checkpoint version on rewrite.
Branch now has two commits over origin/main:
f45406bbea checkpoint: preserve checkpoint version on rewritefdb35e5146 checkpoint: record branch checkpoint version
git status --short --branch shows no tracked working-tree changes. Prior review-fix verification remains valid: focused checkpoint tests, full checkpoint package tests, go vet, mise run lint, and git diff --check all exited 0 before the commit, with no content changes afterward.
No remaining implementation or review steps are pending.
$pfleidi:pr
3w ago
Create Pull Request
1. Understand the Branch
Use origin/main as the comparison base for understanding branch scope. Do not use local main, a local PR target branch, or direct tree diffs such as git diff main or git diff origin/main for scope checks; those can include upstream-only changes and make this branch look like it reverted unrelated work.
1
2
3
BASE=origin/main
MERGE_BASE=$(git merge-base HEAD "$BASE")
git log --oneline "$BASE"..HEAD
Read the commit history to understand the full scope of changes on this branch.
Review the changed file list from the merge base to the current working tree and confirm every changed file belongs to the PR's stated goal:
1
git diff --name-status "$MERGE_BASE"
If unrelated files or commits are present, STOP and report them. Do not create a PR that bundles unrelated work.
2. Sync with origin/main
Before discovering verification commands, bring the branch up to date with origin/main so verification runs against the merged state.
Check that the working tree is clean:
1
git status --short
If there are uncommitted changes, STOP and ask the user to commit or stash them before continuing. A sync into a dirty tree creates ambiguous failure states.
Fetch and merge:
1
2
git fetch origin main
git merge origin/main
Three outcomes:
- Already up to date — no commits to merge. Proceed to step 3.
- Clean merge — merge commit created (or fast-forward applied). Proceed to step 3.
- Conflicts — merge halts with conflicted files. STOP and report each conflicted file. Do NOT auto-resolve; the user must resolve the conflicts and complete the merge commit themselves. Re-run the PR skill after resolution.
3. Discover Project Verification Commands
Inspect the project to determine how to build, lint, and test. Collect candidate commands from these sources, then deduplicate them before running anything:
- Makefile — look for
build,lint,check,test,ci,verifytargets. Read the target recipes to understand what they run. - mise — check for
.mise.tomlor.mise/*.toml. Look for[tasks]definitions covering build, lint, test. If found, usemise run <task>. - CI workflows — read
.github/workflows/*.yml(or.gitlab-ci.yml, etc.) to understand required coverage. CI is the ground truth for what must pass, but CI matrix shards and CI-only wrappers are not automatically local verification commands. - README.md — look for "Development", "Contributing", "Building", or "Testing" sections that document how to run checks.
- Package manager conventions— detect from project files:
go.mod→go build ./...,go vet ./...,go test ./...; do NOT infer a lint command from Go alonepackage.json→ checkscriptsforbuild,lint,testCargo.toml→cargo build,cargo clippy,cargo testpyproject.toml/setup.py→ check for configured linters,pytest
If no lint command exists after checking all sources, state that explicitly instead of assuming an unavailable linter binary.
Reuse Cached Verification Discovery
Before rediscovering commands from scratch, choose an artifact directory using the AGENTS.md temporary artifact rule with agent name pfleidi-pr:
- Use
./tmp/pfleidi-pr/only when./tmp/already exists and is already ignored. - If no project-local artifact directory is available, do not use a verification cache by default. Ask before using
/tmp/pfleidi-pr/or modifying ignore files.
When an artifact directory is available, check for a verification cache at <artifact-dir>/verification-<repo-name>.md. The cache is only an input-token optimization; never commit it and never trust it blindly. If no artifact directory is available, perform normal discovery and skip writing the cache.
Reuse the cache only when all of these are true:
- It names the same worktree root and remote.
- It lists the verification source files it was based on, such as
Makefile,.mise.toml,.mise/*.toml, CI workflow files, README files, and package manifests. - Those source files still exist or are still intentionally absent.
git diff --name-only origin/main -- <source files>shows no branch changes to those source files.
If the cache is missing, stale, or incomplete, perform normal discovery. After discovery, update the cache with:
- Repository root and remote.
- Verification source files inspected.
- Selected command plan grouped by coverage area.
- Commands intentionally skipped as duplicates, aggregate/subtask overlaps, CI-only jobs, or too-slow shard matrices.
- Any assumptions, such as "no documented lint task found."
Deduplicate Verification Commands
Build a command plan by coverage area, not by source. Do not run every command discovered.
- Run at most one command for each coverage area: build/compile, lint/static analysis, unit/core tests, integration tests, e2e/smoke tests.
- Prefer documented local developer tasks over CI-specific commands when they cover the same area.
- Do not run both an aggregate task and its constituent tasks. For example, if
mise run checkruns lint and tests, either runmise run checkalone or run the narrower lint/test tasks, not both. - Treat CI matrix shards as duplicated slices of one suite. Do not run every
*:shard:*command locally when an unsharded local task covers the suite. - If CI has only sharded commands and no local equivalent, ask before running all shards. Otherwise, run the smallest representative or changed-scope test command and note that the full shard matrix remains for CI.
- Do not run CI-only canary/e2e jobs locally by default. Run them only when the PR changes that surface, when the user asks, or when the project documents them as required local PR verification.
Log which sources you used, which duplicate/CI-only commands you skipped, and what commands you will run. If the deduplication rules require asking before slow CI-only coverage, STOP for confirmation; otherwise immediately proceed to step 4.
4. Run Verification and Auto-Fix
Run the deduplicated command plan in the fewest safe batches. Prefer background processing for independent validation tasks instead of running everything sequentially.
The commands should cover, at minimum:
- Build — the project compiles without errors
- Lint / static analysis — no lint warnings or static analysis failures
- Tests — the selected local test coverage passes without duplicating CI shards or aggregate/subtask combinations
Use the exact commands, flags, and build tags found in step 3 for the commands you selected. Do not invent your own flags.
Parallel Verification Rules
Partition the selected commands into dependency-safe batches before running them:
- Run mutating commands alone and before validators that depend on their output. This includes formatters, generators, codegen, migrations, package installation, or commands known to update snapshots, lockfiles, generated files, caches in the repo, or test fixtures.
- Run dependent commands after their prerequisite batch passes. For example, do not start tests that require generated code until generation succeeds.
- Run independent read-only validation commands concurrently in the same background batch. Build, lint/static analysis, typecheck/vet, and unit tests can usually share a batch when they do not mutate the working tree and do not require the same exclusive service, port, database, or fixture directory.
- Keep integration, e2e, or service-backed commands separate unless the project documents that they are parallel-safe.
- If unsure whether two commands are independent, run them sequentially. Correctness of validation beats speed.
For each background batch:
Start every command from the same working-tree state.
Run each selected validator directly, for example
mise run lint,go test ..., ornpm test -- .... Do not wrap validators insh -c, shell redirection,tee, command separators, or pipelines solely to capture logs; that defeats command-prefix approvals and causes extra permission prompts.Capture each command's stdout, stderr, exit status, and command line from the tool output separately.
While the batch is running, do not edit files, start auto-fixes, or treat partial output as a result.
Wait for every command in the batch to finish, then show verification as a compact table:
| Command | Exit | Relevant output |
|---|---|---|
go test ./pkg/foo -run TestBar -count=1 |
0 | Short success excerpt. |
For failures or short outputs, show complete output in the relevant-output column or immediately below the table. For long successful outputs, show the relevant excerpt and state that the rest was truncated.
If any command in the batch fails, treat the whole batch as failed for the fix loop. Results from other commands in that stale batch may help diagnose, but they do not count as passing verification after files change.
On Failure: Fix and Re-verify
If any command fails, do NOT stop. Instead:
- Read the error output and identify every failure
- Fix all issues — apply the minimal changes needed to make the failing command pass
- Re-run the deduplicated verification plan from the top, using the same safe batching rules (not just the previously failing command — fixes can introduce new issues)
- Show the updated verification table again, including complete failure output for any command that still fails
Repeat this cycle until all commands pass. Cap at 3 fix attempts. If verification still fails after 3 rounds, STOP and present the remaining failures to the user with full failure output — do not keep looping.
5. Prompt for Commit
After all verification passes, check for uncommitted changes:
1
git status --short
If there are uncommitted changes (from auto-fixes in step 4):
- Show the diff of all uncommitted changes
- Propose a semantically correct commit message using the subject-plus-context style from
AGENTS.md. The message must describe the net fix (e.g., "fix lint warnings in config parser" not "fix issues found during PR prep"). - If compile/build did not pass for code changes, say the work is not commit-ready and do not ask to commit until the gap is resolved or the user explicitly takes over.
- STOP and wait for user approval. The user may edit the message, split the changes, or commit themselves.
If the user approves the commit, do not rerun the full verification suite before committing unless files changed after step 4. If another sanity check is needed, use the commit-time verification scope from AGENTS.md: lint tasks, a compile/build check for code changes, and tests directly related to the changed code only.
If there are no uncommitted changes, proceed directly to step 6.
6. Push the Branch
1
git push origin HEAD
If the branch has no upstream yet, use git push -u origin HEAD.
7. Create the PR
Determine a concise PR title (under 70 characters) from the commit history and diff.
Determine the GitHub repository slug from the origin remote before writing the PR body:
1
REMOTE_URL=$(git remote get-url origin)
Extract GITHUB_REPO as <owner>/<repo> from these origin URL forms:
git@github.com:<owner>/<repo>.githttps://github.com/<owner>/<repo>.gitssh://git@github.com/<owner>/<repo>.gitentire://<mirror-host>/gh/<owner>/<repo>
Strip a trailing .git when present. For entire:// remotes, ignore the mirror host and use only the suffix after /gh/; do not use any checkpoint-storage repository URL as the PR target when the entire://.../gh/... origin is available.
If the origin URL does not expose a GitHub repository, try:
1
gh repo view --json owner,name --jq '"\(.owner.login)/\(.name)"'
If that still cannot identify a repository, STOP and ask the user for the GitHub target.
Use the same branch-only comparison from step 1 ($MERGE_BASE to the current working tree) when deriving the title, PR body, changed-file list, and mostly-Markdown detection. Do not use local main or direct git diff origin/main output for PR description decisions.
Write the PR body to help a reviewer (human or bot) understand the change without re-deriving it from the diff. Include these sections; omit any that genuinely don't apply:
- Why — the motivation: what problem this solves, what behavior was broken or missing, what constraint forced the change. This is the most important section. Be specific so neither a reviewer nor a bot has to infer the reason from the diff alone.
- What changed — a short, factual summary of the net change. One or two sentences; the diff is the source of truth.
- Implementation decisions — non-obvious choices made along the way: why one approach over another, why an existing abstraction wasn't reused, why a check lives where it does, why a constraint was relaxed or tightened. Surfacing this here heads off repeated bot/reviewer flags pointing at decisions that were intentional.
- Tradeoffs and alternatives considered — when a real choice was made, name the options weighed and why the chosen one won. Skip if the change was mechanical with no meaningful alternatives.
- Reviewer notes — only for migrations, deployment ordering, backwards-incompatible behavior, or known follow-up work not in this PR. Skip otherwise.
- Rendered Markdown (for mostly Markdown PRs) — links to the changed Markdown files rendered on GitHub.
Do NOT include:
- A "Test plan" or "Verification" section listing the CLI commands run. Verification already happened in step 4; the transcript doesn't help the reviewer.
- A list of newly added tests. The diff already shows them; the list rots when tests are renamed or moved.
- A file-by-file changes summary. The diff already shows this too.
Create the PR:
1
gh pr create --draft --repo "$GITHUB_REPO" --title "<title>" --body "<body>"
Create a ready-for-review PR only when the user explicitly asks for it with wording such as "non-draft", "ready for review", or "publish it as ready". In that case, omit --draft.
Show the PR URL and STOP.
Rules
- Do NOT add "Generated with Claude Code" or any AI attribution anywhere
- Do NOT summarize what you just did after showing the URL
- Treat a PR as "mostly Markdown" when more than half of changed files are Markdown (
.md,.mdx,.markdown) or the main review target is Markdown documentation. In that case, include GitHub rendered links for the changed Markdown files using the pushed branch, e.g.https://github.com/$GITHUB_REPO/blob/<branch>/<path>.md. Link all changed Markdown files when the list is short; for large docs PRs, link the main entry points or most important changed files. - If the user provides a title or description, use it verbatim instead of generating one, but append rendered Markdown links for mostly Markdown PRs unless the user explicitly says not to modify the description.
- If the PR description contains checklist items (
- [ ]), check them (- [x]) if and only if the corresponding step was actually verified during this workflow (e.g., build passed, tests passed, lint passed). Do NOT check items that were not verified. Do NOT leave items unchecked if they were verified.
3w ago·10.7s·72 calls
Using pfleidi:pr to prepare and open a draft PR for the current branch. I’ll follow its workflow: scope check against origin/main, sync, discover/deduplicate verification, run checks, push, then create the PR.
I’m starting the PR scope check against origin/main using the merge-base path required by the PR workflow. If the branch contains anything outside checkpoint-version metadata, I’ll stop before pushing.
Merge base is 77cba9fc4ef5908403d64f5511260ce33507c133. I’m reading the branch commits and changed-file list from that base now.
Scope check: 6 changed files, all related to checkpoint metadata versioning; commits are the two checkpoint-version commits. Working tree is clean, so I’m syncing with origin/main now.
Fetch completed. I’m merging origin/main into the branch per the PR workflow; this writes Git metadata, so it needs elevated git access.
git merge origin/main reported “Already up to date.” I’m checking the verification-command cache location and then I’ll inspect the project’s documented verification sources.
tmp/ exists and is ignored, but there is no PR verification cache yet. I’m creating tmp/pfleidi-pr/ and doing normal discovery from mise, CI, README, and manifests.
I’m locating the verification source files first, then I’ll read only the relevant sections instead of running every discovered command.
The first file scan missed hidden config by default, so I’m repeating with hidden files included to catch .mise.toml and CI workflows.
I found CI workflows, README, and go.mod; there is no tracked Makefile or .mise.toml from the scan. I’m reading the README development/testing sections and CI/lint workflow definitions.
The README documents mise run build, mise run test, mise run test:integration, mise run test:ci, mise run lint, and mise run fmt; CI uses mise run test:ci:core, sharded integration, canary e2e, and mise run lint. I’m reading the mise task files directly so I can deduplicate instead of running aggregate and subtasks together.
The command discovery sources point to build, lint, unit/core tests, integration shards, and canary E2E. I’m reading the task recipes to select the smallest non-duplicative local PR checks.
There is no mise-tasks/test/_default file at that path, so I’m listing the test task tree and reading the actual default test recipe.
The lint task includes subchecks including gofmt, go mod tidy, shellcheck, and golangci-lint. CI additionally runs core tests, integration shards, and canary E2E; for this checkpoint package metadata change, I’ll use the local build/lint/core-test coverage and not run CI-only shard/e2e jobs unless needed.
I have the PR workflow in progress. Scope and sync are already checked; I’m finishing the verification selection now so the local checks match the repo’s CI without running duplicate or costly jobs.
I’m refreshing the skill instructions from disk after the context handoff so I don’t drift from its exact PR flow.
The skill confirms the next step is a deduplicated local verification plan, then push and draft PR creation if the tree stays clean. I’m checking current branch state once before running the selected commands.
The working tree is clean and the branch scope is still just checkpoint metadata code, tests, and the architecture doc. I’m going to cache the verification discovery in the ignored tmp/pfleidi-pr directory before running checks.
I selected one command per coverage area: lint/static via the documented lint task, build via the documented build task, and CI core tests via the CI task. I’m skipping the integration shards and e2e canary locally because this PR does not touch those surfaces and CI covers them.
Starting verification with the mutating command first. mise run lint can run auto-fixers/tidy checks in this repo, so I’m keeping it separate before build and tests.
Lint completed without reported issues. I’m checking whether it changed the tree before running the read-only build and test commands.
The tree stayed clean after lint. I’m running the independent build and CI core test commands in parallel now.
Build exited successfully. The CI core test command is still running, so I’m waiting on that process before deciding whether anything needs fixing.
mise run test:ci:core failed in strategy tests because subprocess git segfaulted during test setup/ref checks. Since this is a test failure, I’m switching into the debugging workflow before deciding whether it’s an environmental flake or something this branch caused.
The failing package is cmd/entire/cli/strategy, and both failures are subprocess git segmentation faults in temp repos. I’m reading those exact tests and rerunning only the failing cases with the same race/integration settings to see whether this is repeatable.
The two failed cases pass when rerun directly with the same tags and race flag. I’m now rerunning the whole strategy package to check whether the failure is a package-level intermittent crash rather than a deterministic failure in this branch.
The failing tests are not reproducible in focused or package reruns; the root cause points to an intermittent external git crash during the broad parallel test run, not this checkpoint-version change. Per the PR workflow, I’m rerunning the full selected verification plan from the top on the unchanged tree.
Lint passed again and did not change the tree. I’m rerunning build and CI core tests now.
Build passed on the rerun. The core test suite is still active; I’m waiting for the final exit status.
Verification after rerun:
| Command | Exit | Relevant output |
|---|---|---|
mise run lint |
0 | lint:go reported 0 issues; gofmt/gomod/mise/shellcheck tasks exited 0. |
mise run build |
0 | Build task completed successfully. |
mise run test:ci:core |
0 | cmd/entire/cli/checkpoint cached from the prior successful run; cmd/entire/cli/strategy passed in 29.430s; all listed packages passed. |
The earlier test:ci:core run failed once from a subprocess git segmentation fault in strategy tests. The exact failed cases and the full strategy package both passed on focused reruns, and the complete selected plan passed after rerun.
The working tree is clean after verification, so there is nothing to commit. I’m checking whether the branch already has an upstream before pushing.
No upstream is configured, so I’m pushing with -u to publish the branch and set tracking.
The push is still running while it syncs the checkpoint metadata ref. I’m waiting for the final push status before creating the PR.
The branch is pushed and tracking origin/feat/checkpoint-version-metadata. I’m checking for an existing PR for this branch before creating a new draft.
No existing PR is open for this branch. I’m writing the PR body to an ignored temp file so gh pr create can use it without fragile shell quoting.
Creating the draft PR against entireio/cli now.
<turn_aborted> The user interrupted the previous turn on purpose. Any running unified exec processes may still be running in the background. If any tools/commands were aborted, they may have partially executed. </turn_aborted>
3w ago
Can you reference the issue I've pasted earlier in the pr description, too?
3w ago·11.5s·6 calls
I’ll add the issue reference to the PR body and first check whether the interrupted gh pr create completed despite the abort.
The interrupted create did not leave a PR behind, and the tree is still clean. I’m adding a non-closing Refs #1471 line to the description, then I’ll create the draft PR.
Creating the draft PR with the updated body now.
gh pr create failed because this sandbox cannot reach api.github.com. I’m rerunning the same command with network approval.
gh needs the head/base specified because the repo remote is an entire:// mirror, not a GitHub URL. I’m retrying with the GitHub repo plus explicit --base main --head feat/checkpoint-version-metadata.