Generalize Agent Import Across Platforms · Entire
Log in
When someone runs entire enable and they have existing claude projects corresponding to the repo they enabled entire in, entire should prompt them to see if they want to import their existing claude context.
More detail is in https://github.com/entireio/cli/issues/1336.
Ideally if Claude co-authored commits, we could attach these new checkpoints to those commits, but that's not necessary for a first pass.
The only caveat I'd like to discuss is what these "orphaned" checkpoints are like otherwise since they won't be attached to any commits. There may be some gaps in the code that need to be inspected
3w ago
Base directory for this skill: /Users/ninawork/.claude/plugins/cache/claude-plugins-official/superpowers/6.0.3/skills/brainstorming
Brainstorming Ideas Into Designs
Help turn ideas into fully formed designs and specs through natural collaborative dialogue.
Start by understanding the current project context, then ask questions one at a time to refine the idea. Once you understand what you're building, present the design and get user approval.
Anti-Pattern: "This Is Too Simple To Need A Design"
Every project goes through this process. A todo list, a single-function utility, a config change — all of them. "Simple" projects are where unexamined assumptions cause the most wasted work. The design can be short (a few sentences for truly simple projects), but you MUST present it and get approval.
Checklist
You MUST create a task for each of these items and complete them in order:
- Explore project context — check files, docs, recent commits
- Offer the visual companion just-in-time — NOT upfront. The first time a question would genuinely be clearer shown than described, offer it then (its own message); on approval its browser tab opens for you. If no visual question ever arises, never offer it. See the Visual Companion section below.
- Ask clarifying questions — one at a time, understand purpose/constraints/success criteria
- Propose 2-3 approaches — with trade-offs and your recommendation
- Present design — in sections scaled to their complexity, get user approval after each section
- Write design doc — save to
docs/superpowers/specs/YYYY-MM-DD-<topic>-design.mdand commit - Spec self-review — quick inline check for placeholders, contradictions, ambiguity, scope (see below)
- User reviews written spec — ask user to review the spec file before proceeding
- Transition to implementation — invoke writing-plans skill to create implementation plan
Process Flow
digraph brainstorming {
"Explore project context" [shape=box];
"Ask clarifying questions" [shape=box];
"Propose 2-3 approaches" [shape=box];
"Present design sections" [shape=box];
"User approves design?" [shape=diamond];
"Write design doc" [shape=box];
"Spec self-review\n(fix inline)" [shape=box];
"User reviews spec?" [shape=diamond];
"Invoke writing-plans skill" [shape=doublecircle];
"Explore project context" -> "Ask clarifying questions";
"Ask clarifying questions" -> "Propose 2-3 approaches";
"Propose 2-3 approaches" -> "Present design sections";
"Present design sections" -> "User approves design?";
"User approves design?" -> "Present design sections" [label="no, revise"];
"User approves design?" -> "Write design doc" [label="yes"];
"Write design doc" -> "Spec self-review\n(fix inline)";
"Spec self-review\n(fix inline)" -> "User reviews spec?";
"User reviews spec?" -> "Write design doc" [label="changes requested"];
"User reviews spec?" -> "Invoke writing-plans skill" [label="approved"];
}
The terminal state is invoking writing-plans. Do NOT invoke frontend-design, mcp-builder, or any other implementation skill. The ONLY skill you invoke after brainstorming is writing-plans.
The Process
Understanding the idea:
- Check out the current project state first (files, docs, recent commits)
- Before asking detailed questions, assess scope: if the request describes multiple independent subsystems (e.g., "build a platform with chat, file storage, billing, and analytics"), flag this immediately. Don't spend questions refining details of a project that needs to be decomposed first.
- If the project is too large for a single spec, help the user decompose into sub-projects: what are the independent pieces, how do they relate, what order should they be built? Then brainstorm the first sub-project through the normal design flow. Each sub-project gets its own spec → plan → implementation cycle.
- For appropriately-scoped projects, ask questions one at a time to refine the idea
- Prefer multiple choice questions when possible, but open-ended is fine too
- Only one question per message - if a topic needs more exploration, break it into multiple questions
- Focus on understanding: purpose, constraints, success criteria
Exploring approaches:
- Propose 2-3 different approaches with trade-offs
- Present options conversationally with your recommendation and reasoning
- Lead with your recommended option and explain why
Presenting the design:
- Once you believe you understand what you're building, present the design
- Scale each section to its complexity: a few sentences if straightforward, up to 200-300 words if nuanced
- Ask after each section whether it looks right so far
- Cover: architecture, components, data flow, error handling, testing
- Be ready to go back and clarify if something doesn't make sense
Design for isolation and clarity:
- Break the system into smaller units that each have one clear purpose, communicate through well-defined interfaces, and can be understood and tested independently
- For each unit, you should be able to answer: what does it do, how do you use it, and what does it depend on?
- Can someone understand what a unit does without reading its internals? Can you change the internals without breaking consumers? If not, the boundaries need work.
- Smaller, well-bounded units are also easier for you to work with - you reason better about code you can hold in context at once, and your edits are more reliable when files are focused. When a file grows large, that's often a signal that it's doing too much.
Working in existing codebases:
- Explore the current structure before proposing changes. Follow existing patterns.
- Where existing code has problems that affect the work (e.g., a file that's grown too large, unclear boundaries, tangled responsibilities), include targeted improvements as part of the design - the way a good developer improves code they're working in.
- Don't propose unrelated refactoring. Stay focused on what serves the current goal.
After the Design
Documentation:
- Write the validated design (spec) to
docs/superpowers/specs/YYYY-MM-DD-<topic>-design.md- (User preferences for spec location override this default)
- Use elements-of-style:writing-clearly-and-concisely skill if available
- Commit the design document to git
Spec Self-Review: After writing the spec document, look at it with fresh eyes:
- Placeholder scan: Any "TBD", "TODO", incomplete sections, or vague requirements? Fix them.
- Internal consistency: Do any sections contradict each other? Does the architecture match the feature descriptions?
- Scope check: Is this focused enough for a single implementation plan, or does it need decomposition?
- Ambiguity check: Could any requirement be interpreted two different ways? If so, pick one and make it explicit.
Fix any issues inline. No need to re-review — just fix and move on.
User Review Gate: After the spec review loop passes, ask the user to review the written spec before proceeding:
"Spec written and committed to
<path>. Please review it and let me know if you want to make any changes before we start writing out the implementation plan."
Wait for the user's response. If they request changes, make them and re-run the spec review loop. Only proceed once the user approves.
Implementation:
- Invoke the writing-plans skill to create a detailed implementation plan
- Do NOT invoke any other skill. writing-plans is the next step.
Key Principles
- One question at a time - Don't overwhelm with multiple questions
- Multiple choice preferred - Easier to answer than open-ended when possible
- YAGNI ruthlessly - Remove unnecessary features from all designs
- Explore alternatives - Always propose 2-3 approaches before settling
- Incremental validation - Present design, get approval before moving on
- Be flexible - Go back and clarify when something doesn't make sense
Visual Companion
A browser-based companion for showing mockups, diagrams, and visual options during brainstorming. Available as a tool — not a mode. Accepting the companion means it's available for questions that benefit from visual treatment; it does NOT mean every question goes through the browser.
Offering the companion (just-in-time): Do NOT offer it upfront. Wait until a question would genuinely be clearer shown than told — a real mockup / layout / diagram question, not merely a UI topic. The first time that happens, offer it then, as its own message:
"This next part might be easier if I show you — I can put together mockups, diagrams, and comparisons in a browser tab as we go. It's still new and can be token-intensive. Want me to? I'll open it for you."
This offer MUST be its own message. Only the offer — no clarifying question, summary, or other content. Wait for the user's response. If they accept, start the server with --open so their browser opens to the first screen automatically. If they decline, continue text-only and don't offer again unless they raise it.
Per-question decision: Even after the user accepts, decide FOR EACH QUESTION whether to use the browser or the terminal. The test: would the user understand this better by seeing it than reading it?
- Use the browser for content that IS visual — mockups, wireframes, layout comparisons, architecture diagrams, side-by-side visual designs
- Use the terminal for content that is text — requirements questions, conceptual choices, tradeoff lists, A/B/C/D text options, scope decisions
A question about a UI topic is not automatically a visual question. "What does personality mean in this context?" is a conceptual question — use the terminal. "Which wizard layout works better?" is a visual question — use the browser.
If they agree to the companion, read the detailed guide before proceeding:
skills/brainstorming/visual-companion.md
3w ago·1m·6 calls
I've launched three parallel exploration agents to map the enable flow, the checkpoint/commit-attachment model (the key question for your "orphaned checkpoint" concern), and the Claude transcript discovery/parsing code. I'll synthesize their findings when they return and come back with the design questions.
entire enable Command Analysis
1. File Paths & Functions
Main implementation file:
/Users/ninawork/entire/devenv/cli/cmd/entire/cli/setup.go
Key functions:
newEnableCmd()— lines 753–935 (command constructor)runSetupFlow()— lines 384–401 (initial setup for fresh repos)runEnableInteractive()— lines 1054–1187 (interactive enable with agent selection + settings)runManageAgents()— lines 414–518 (agent selection/management)detectOrSelectAgent()— lines 1382–1534 (agent auto-detection + user selection)promptTelemetryConsent()— lines 1871–1909 (telemetry consent prompt)maybePromptVercelDeploymentDisable()— lines 1911–1993 (Vercel deployment prompt)setupEntireDirectory()— lines 1708–1733 (creates.entiredir +.gitignore)runEnable()— lines 1200–1215 (lightweight re-enable for already-enabled repos)
Supporting packages:
/Users/ninawork/entire/devenv/cli/cmd/entire/cli/paths/paths.go—WorktreeRoot()at line 70/Users/ninawork/entire/devenv/cli/cmd/entire/cli/interactive/interactive.go—CanPromptInteractively()at line 34/Users/ninawork/entire/devenv/cli/cmd/entire/cli/utils.go—NewAccessibleForm()at line 26/Users/ninawork/entire/devenv/cli/cmd/entire/cli/config.go—IsEnabled()at line 58,LoadEntireSettings()at line 32
2. Step-by-Step Flow of entire enable
Entry Point (line 770–893)
The enable command's RunE function performs these steps:
- Bootstrap Detection (lines 793–829)
- Checks if current directory is a git repository via
paths.WorktreeRoot(ctx) - If not a git repo and user hasn't declined (
--no-init-repo), offers bootstrap flow (init git + optional GitHub repo creation) - Bootstrap runs in two phases: phase 1 (git init + identity) before agent setup, phase 2 (commit + push) after
- Checks if current directory is a git repository via
- Validate Flags (line 831)
- Ensures
--localand--projectaren't both specified
- Ensures
- External Agent Discovery (lines 835–838)
- Calls
external.DiscoverAndRegisterAlways(ctx)to find external agents on$PATH
- Calls
- Non-interactive Agent Setup (lines 840–856)
- If
--agent <name>flag provided: validates agent name, then callssetupAgentHooksNonInteractive()and returns - Skips the interactive flow entirely
- If
- Re-enable Path for Already-Setup Repos (lines 860–889)
- If
settings.IsSetUpAny(ctx)returns true (Entire already configured):
- If
- Checks if any setup-mutating flags were used (via
enableUsesSetupFlow())- If flags present: updates settings/agents as needed via
updateStrategyOptions()orrunManageAgents() - If just re-enabling: calls lightweight
runEnable()to toggle.Enabledflag - Displays enabled status
- If flags present: updates settings/agents as needed via
- Fresh Repo Setup (lines 891–892)
- Calls
runSetupFlow()for interactive full setup
- Calls
Full Setup Flow (Fresh Repos) — runSetupFlow() (lines 384–401)
- Discovers external agents
- Calls
detectOrSelectAgent()to prompt for agent selection (or auto-detect single agent) - Calls
runEnableInteractive()with selected agents
Interactive Enable — runEnableInteractive() (lines 1054–1187)
Sequence:
- Remove deselected agents (lines 1056–1058)
- Uninstalls hooks for any agents that were previously installed but are not in the selected list
- Set up agent hooks (lines 1061–1065)
- For each selected agent:
setupAgentHooks()→ callsag.InstallHooks(ctx, localDev, forceHooks) - Scaffolds search subagent if needed
- Prints results
- For each selected agent:
- Create
.entiredirectory (lines 1068–1070)- Calls
setupEntireDirectory()→ creates.entire/folder +.gitignore
- Calls
- Load or create settings (lines 1072–1095)
- Loads existing settings (or creates empty
EntireSettings{}) - Sets
Enabled = true - Applies flags:
LocalDev,AbsoluteGitHookPath - Auto-enables
ExternalAgentsif any selected agent is external - Applies strategy options from flags
- Loads existing settings (or creates empty
- Determine settings file target (lines 1097–1108)
- If settings.json exists but we're doing first setup: redirects to settings.local.json with notification
- Otherwise: writes to settings.json
- Save settings (lines 1110–1120)
- Calls
saveSettingsToTarget()→ writes to chosen file (JSON format)
- Calls
- Install git hook (lines 1122–1128)
- Calls
strategy.InstallGitHook(ctx, true, settings.LocalDev, settings.AbsoluteGitHookPath) - Warns about hook managers if needed (e.g., pre-commit framework)
- Calls
- Prompt for Vercel deployment disable (lines 1137–1143)
- If
vercel.jsonor.vercel/detected: offers to update settings to block Vercel deploys on metadata branch maybePromptVercelDeploymentDisable()— see prompting pattern below
- If
- Prompt for telemetry consent (lines 1145–1162)
- If
--yesflag: auto-sets based on--telemetry=falseor env varENTIRE_TELEMETRY_OPTOUT - Otherwise: calls
promptTelemetryConsent()for interactive form - Saves settings again after consent
- If
- Ensure strategy setup (lines 1164–1166)
- Calls
strategy.EnsureSetup(ctx)to create necessary session state dirs
- Calls
- Print done message (lines 1168–1184)
- Prints "Ready." (unless
SuppressDoneMessageset by bootstrap) - Checks if repo is empty and prints note about needing commits
- Prints "Ready." (unless
3. Interactive Prompt Patterns & Code Excerpts
Pattern 1: Agent Selection (Multi-Select Form)
Location:detectOrSelectAgent() lines 1499–1517 (re-enable path) and lines 1382–1534 (main agent selector)
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form := NewAccessibleForm(
huh.NewGroup(
huh.NewMultiSelect[string]().
Title("Select the agents you want to use").
Description("Use space to select, enter to confirm.").
Options(options...).
Validate(func(selected []string) error {
if len(selected) == 0 {
return errors.New("please select at least one agent")
}
return nil
}).
Value(&selectedAgentNames),
),
)
if err := form.Run(); err != nil {
return nil, fmt.Errorf("agent selection cancelled: %w", err)
}
How it works:
NewAccessibleForm()wrapshuh.NewForm()and auto-detectsACCESSIBLE=1env var (viauiform.New())- Multi-select allows space to toggle items, Enter to confirm
- Pre-selected agents are marked with
.Selected(true)before form creation (lines 1471–1475) - Non-interactive fallback: if
selectFnprovided (e.g.,--yes), skips the form and callsselectFn(availableNames)instead
Detection of agents:
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agentNames := agent.List() // Get registered agent names
for _, name := range agentNames {
ag, err := agent.Get(name)
// Filter: only hook-supporting agents, skip test-only agents
if _, ok := agent.AsHookSupport(ag); !ok {
continue
}
if to, ok := ag.(agent.TestOnly); ok && to.IsTestOnly() {
continue
}
// Build huh.Option from each agent
}
Available agents (from agent package registrations): claude-code, codex, cursor, copilot-cli, factoryaidroid, geminicli, plus external agents discovered via external.DiscoverAndRegisterAlways()
Pattern 2: Telemetry Consent (Confirm Form)
Location:promptTelemetryConsent() lines 1891–1909
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consent := true // Default to Yes
form := NewAccessibleForm(
huh.NewGroup(
huh.NewConfirm().
Title("Help improve Entire CLI?").
Description("Share anonymous usage data. No code or personal info collected.").
Affirmative("Yes").
Negative("No").
Value(&consent),
),
)
if err := form.Run(); err != nil {
return fmt.Errorf("telemetry prompt: %w", err)
}
settings.Telemetry = &consent // Store boolean pointer
Skipped if:
--telemetry=falseflag provided (line 1873)- Settings already have
Telemetry != nil(line 1880) ENTIRE_TELEMETRY_OPTOUTenv var set (line 1885)--yesflag used (auto-sets based on flag + env var; see line 1148–1154)
Pattern 3: Vercel Deployment Disable (Confirm Form)
Location:promptVercelDeploymentDisable() lines 1995–2013
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disableDeployments := true // Default to Yes
form := NewAccessibleForm(
huh.NewGroup(
huh.NewConfirm().
Title("Disable Vercel deployments for Entire metadata branch?").
Description("This automatically creates a vercel.json in the Entire metadata branch.").
Affirmative("Yes").
Negative("No").
Value(&disableDeployments),
),
)
if err := form.Run(); err != nil {
return false, fmt.Errorf("run vercel deployment disable form: %w", err)
}
return disableDeployments, nil
Triggered by:maybePromptVercelDeploymentDisable() (line 1911) detects vercel.json or .vercel/ directory and prompts
Skipped if:
- Non-interactive mode detected (line 1968):
interactive.CanPromptInteractively()returns false promptFnfunction override provided (line 1967)
Pattern 4: Shell Completion (Select Form)
Location:promptShellCompletion() lines 1808–1837
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var selected string
form := NewAccessibleForm(
huh.NewGroup(
huh.NewSelect[string]().
Title(fmt.Sprintf("Enable shell completion? (detected: %s)", shellName)).
Options(
huh.NewOption("Yes", "yes"),
huh.NewOption("No", "no"),
).
Value(&selected),
),
)
if err := form.Run(); err != nil {
return nil
}
if selected != "yes" {
return nil
}
4. Repo Root & Agent Detection
Repo Root Detection
Via paths.WorktreeRoot(ctx context.Context) (line 70 of paths.go):
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cmd := exec.CommandContext(ctx, "git", "rev-parse", "--show-toplevel")
output, err := cmd.Output()
if err != nil {
return "", fmt.Errorf("failed to get git worktree root: %w", err)
}
root := strings.TrimSpace(string(output))
// Cached per working directory
Used in enable command:
- Line 793:
if _, err := paths.WorktreeRoot(ctx); err == nil— checks if in a git repo - Passed as context throughout to resolve relative paths like
.entire/settings.json - Handles git worktrees correctly (returns worktree root, not main repo root)
Agent Configuration
Detection:
agent.List()— returns all registered agent names (lines 1456, 1448)agent.Get(name)— retrieves agent instanceagent.DetectAll(ctx)— auto-detects agents present in$PATH(line 1388)external.IsExternal(ag)— checks if agent is external (line 1537, 1089, 1449)agent.AsHookSupport(ag)— filters to hook-supporting agents only (line 1464, 455)
Auto-enable external_agents:
- Lines 1087–1092: If any selected agent is external, auto-sets
settings.ExternalAgents = true - External agents discovered via
external.DiscoverAndRegisterAlways(ctx)(line 388, 445, 838)
5. Non-Interactive Detection
Conditions for Non-Interactive Mode
--agent <name>flag (lines 840–856)- Single targeted agent setup
- No agent selection form, no telemetry prompt, no Vercel prompt
- Calls
setupAgentHooksNonInteractive()
--yesflag (line 908)- Accepts all defaults
- Sets
opts.Yes = true - Affects:
- Agent selection: calls
selectAllAgents()instead of form (line 391, 405) - Telemetry prompt: auto-answers Yes (unless
--telemetry=falseor env var; line 1148–1154) - Vercel prompt: passed
vercelPromptFn = func() (bool, error) { return true, nil }(line 1139)
- Agent selection: calls
- TTY Detection (via
interactive.CanPromptInteractively(), line 34 of interactive.go)- Checks in order:
ENTIRE_TEST_TTY=1(force interactive ON) or any other value (force OFF)testing.Testing()— false in tests to prevent hanging- Agent subprocess env vars:
GEMINI_CLI,COPILOT_CLI,PI_CODING_AGENT,GIT_TERMINAL_PROMPT=0 CIenv var set to non-empty, non-falsevalue/dev/ttyprobe — attempts to open/dev/tty
- Returns
trueif user can be prompted,falseotherwise
- Checks in order:
- No TTY in Already-Setup Path (lines 1415–1437)
- If Entire already enabled and
CanPromptInteractively() == false:
- If Entire already enabled and
- Agent selection keeps currently installed agents (line 1416–1426)
- Or falls back to auto-detected agents (line 1428–1429)
- Or uses default agent (line 1431–1436)
- Bootstrap Non-Interactive (line 794, 908)
--yesflag propagates tobootstrapOpts.Yes- Bootstrap can initialize git repo non-interactively
Recommended Location for New Interactive Prompt
Best placement: End of runEnableInteractive(), after telemetry prompt and before the "Ready." message
Suggested lines: Between line 1162 (telemetry save) and line 1174 (print "Ready.")
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// After line 1162: saveSettings() for telemetry
// NEW PROMPT HERE:
if err := promptImportClaudeContext(ctx, w, opts); err != nil {
return err
}
// Before line 1174: print "Ready."
Implementation template:
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// promptImportClaudeContext asks if the user wants to import existing Claude context.
func promptImportClaudeContext(ctx context.Context, w io.Writer, opts EnableOptions) error {
// Skip in --yes mode (auto-accept default)
if opts.Yes {
return nil // Or auto-set to true/false as needed
}
// Skip in non-interactive mode
if !interactive.CanPromptInteractively() {
fmt.Fprintln(w, "Skipping Claude context import prompt (non-interactive mode).")
return nil
}
importContext := false // Default to No
form := NewAccessibleForm(
huh.NewGroup(
huh.NewConfirm().
Title("Import existing Claude context?").
Description("Copy Claude IDE session state and settings from .claude/ if available.").
Affirmative("Yes").
Negative("No").
Value(&importContext),
),
)
if err := form.Run(); err != nil {
return fmt.Errorf("Claude context import prompt: %w", err)
}
if importContext {
// Perform import logic here
fmt.Fprintln(w, "✓ Imported Claude context")
}
return nil
}
Key patterns to follow:
- Respect
opts.Yesflag (auto-accept or skip) - Check
interactive.CanPromptInteractively()before showing form - Use
NewAccessibleForm()for accessibility support - Handle form cancellation with
.Run()error check - Print status messages to writer
w - Return errors for caller to propagate
Summary Table
| Aspect | Details |
|---|---|
| Main file | /Users/ninawork/entire/devenv/cli/cmd/entire/cli/setup.go |
| Command constructor | newEnableCmd() at line 753 |
| Entry point | RunE closure at line 770 |
| Fresh repo flow | runSetupFlow() → detectOrSelectAgent() → runEnableInteractive() |
| Re-enable path | runEnable() (lightweight toggle) at line 1200 |
| Repo root detection | paths.WorktreeRoot(ctx) using git rev-parse --show-toplevel |
| Agent selection | detectOrSelectAgent() with NewAccessibleForm() + huh.MultiSelect |
| Interactive detection | interactive.CanPromptInteractively() (TTY probe + CI/agent env detection) |
| Non-interactive modes | --agent <name>, --yes, CI env, agent subprocess env |
| Telemetry prompt | promptTelemetryConsent() at line 1871; skipped if --yes, --telemetry=false, or ENTIRE_TELEMETRY_OPTOUT |
| Vercel prompt | maybePromptVercelDeploymentDisable() at line 1911; triggered if vercel.json exists |
| Accessibility | ACCESSIBLE=1 env var → NewAccessibleForm() auto-switches to text prompts |
| Settings file | Writes to .entire/settings.json (project) or .entire/settings.local.json (local) |
| Git hook installation | strategy.InstallGitHook(ctx, true, localDev, absolutePath) at line 1124 |
| Final message | "Ready." printed at line 1174 (unless opts.SuppressDoneMessage set by bootstrap) |
3w ago·14.0s
The enable flow is mapped. Waiting on the other two agents (checkpoint/commit-attachment model and transcript parsing) before I synthesize.
Summary
I've thoroughly explored how the Entire CLI locates and parses Claude Code agent transcripts, including the architecture for splitting transcripts into per-turn checkpoints and handling subagent token rollups. Here are the concrete findings:
1. Repo Root → Claude Projects Directory Mapping
Key Function: SanitizePathForClaude (file:line)
/Users/ninawork/entire/devenv/cli/cmd/entire/cli/agent/claudecode/claude.go:265-267
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func SanitizePathForClaude(path string) string {
return nonAlphanumericRegex.ReplaceAllString(path, "-")
}
Location Resolution (GetSessionDir)
/Users/ninawork/entire/devenv/cli/cmd/entire/cli/agent/claudecode/claude.go:95-108
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// GetSessionDir returns the directory where Claude stores session transcripts.
func (c *ClaudeCodeAgent) GetSessionDir(repoPath string) (string, error) {
homeDir, err := os.UserHomeDir()
if err != nil {
return "", fmt.Errorf("failed to get home directory: %w", err)
}
projectDir := SanitizePathForClaude(repoPath)
return filepath.Join(homeDir, ".claude", "projects", projectDir), nil
}
Session File Resolution (ResolveSessionFile)
/Users/ninawork/entire/devenv/cli/cmd/entire/cli/agent/claudecode/claude.go:87-89
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// ResolveSessionFile returns the path to a Claude session file.
// Claude names files directly as <id>.jsonl.
func (c *ClaudeCodeAgent) ResolveSessionFile(sessionDir, agentSessionID string) string {
return filepath.Join(sessionDir, agentSessionID+".jsonl")
}
Example Path: ~/.claude/projects/Users-ninawork-entire-devenv-cli/<session-id>.jsonl
2. Transcript Parsing (.jsonl Format)
Core Types (transcript.Line)
/Users/ninawork/entire/devenv/cli/cmd/entire/cli/transcript/types.go:19-27
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// Line represents a single line in a Claude Code or Cursor JSONL transcript.
type Line struct {
Type string `json:"type"`
Role string `json:"role,omitempty"`
UUID string `json:"uuid"`
Message json.RawMessage `json:"message"`
}
Parse Functions
/Users/ninawork/entire/devenv/cli/cmd/entire/cli/transcript/parse.go:17-46—ParseFromBytes()for in-memory parsing/Users/ninawork/entire/devenv/cli/cmd/entire/cli/transcript/parse.go:49-98—ParseFromFileAtLine()for file-based incremental parsing starting from a line offset
Turn/Message Structure (AssistantMessage)
/Users/ninawork/entire/devenv/cli/cmd/entire/cli/transcript/types.go:34-46
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type AssistantMessage struct {
Content []ContentBlock `json:"content"`
}
type ContentBlock struct {
Type string `json:"type"`
ID string `json:"id,omitempty"`
Text string `json:"text,omitempty"`
Name string `json:"name,omitempty"`
Input json.RawMessage `json:"input,omitempty"`
}
Token Usage Extraction (CalculateTokenUsage)
/Users/ninawork/entire/devenv/cli/cmd/entire/cli/agent/claudecode/transcript.go:140-183
Token usage deduplication by message.id (handles streaming):
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type messageWithUsage struct {
ID string `json:"id"`
Usage messageUsage `json:"usage"`
}
type messageUsage struct {
InputTokens int `json:"input_tokens"`
CacheCreationInputTokens int `json:"cache_creation_input_tokens"`
CacheReadInputTokens int `json:"cache_read_input_tokens"`
OutputTokens int `json:"output_tokens"`
}
Timestamp Extraction
/Users/ninawork/entire/devenv/cli/cmd/entire/cli/paths/transcript.go:48-67—ParseTimestampFromJSONL()extractstimestampfield from JSONL
Slice by Line Offset
/Users/ninawork/entire/devenv/cli/cmd/entire/cli/transcript/parse.go:110-143—SliceFromLine(content, startLine)returns checkpoint-specific portion starting at line N
3. Subagent Token Rollups
Subagent ID Extraction (ExtractSpawnedAgentIDs)
/Users/ninawork/entire/devenv/cli/cmd/entire/cli/agent/claudecode/transcript.go:200-269
Subagent IDs are found in tool_result blocks with pattern agentId: <id>. Path validation ensures safety:
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// Look for agentId in the text. Drop any ID that isn't path-safe:
if agentID := extractAgentIDFromText(textContent); agentID != "" && validation.ValidateAgentID(agentID) == nil {
agentIDs[agentID] = block.ToolUseID
}
Total Token Usage with Subagents (CalculateTotalTokenUsage)
/Users/ninawork/entire/devenv/cli/cmd/entire/cli/agent/claudecode/transcript.go:383-423
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// Extract spawned agent IDs from the parsed transcript
agentIDs := ExtractSpawnedAgentIDs(parsed)
// Calculate subagent token usage (skip when subagentsDir is empty)
if len(agentIDs) > 0 && subagentsDir != "" {
subagentUsage := &agent.TokenUsage{}
for agentID := range agentIDs {
agentPath := filepath.Join(subagentsDir, fmt.Sprintf("agent-%s.jsonl", agentID))
agentUsage, err := CalculateTokenUsageFromFile(agentPath, 0)
// ... accumulate subagentUsage
}
}
Subagent File Storage (from lifecycle.go)
/Users/ninawork/entire/devenv/cli/cmd/entire/cli/lifecycle.go(line ~930)
Subagent transcripts stored at: <session-dir>/<session-id>/subagents/agent-<id>.jsonl
4. Checkpoint Transcript Slicing & Per-Turn Granularity
Session State Tracks Start Offset (SessionState.CheckpointTranscriptStart)
/Users/ninawork/entire/devenv/cli/cmd/entire/cli/strategy/session_state.go
This is the 0-indexed line number at which the current checkpoint's transcript data begins.
Checkpoint Metadata (CheckpointTranscriptStart)
/Users/ninawork/entire/devenv/cli/api/checkpoint/metadata.go:99— also calledTranscriptLinesAtStartfor backward compat
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CheckpointTranscriptStart int // Transcript line offset at start of this checkpoint's data
Slice Calculation During Finalization (finalizeAllTurnCheckpoints)
/Users/ninawork/entire/devenv/cli/cmd/entire/cli/strategy/manual_commit_hooks.go:2729-2880
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// Slice to the relevant portion of the full transcript
sliced := transcript.SliceFromLine(transcriptData, startLine)
parsed, err := transcript.ParseFromBytes(sliced)
Per-Turn Checkpoint Creation
- Checkpoints are created one per user-prompt turn (via
PrepareCommitMsghook addingEntire-Checkpoint-IDtrailer) - Each
TurnCheckpointIDstored inSessionState.TurnCheckpointIDs(list of checkpoint IDs from mid-turn commits) - On session stop,
finalizeAllTurnCheckpoints()updates all turn checkpoints with the full transcript
Compact Transcript Format (optional pre-sliced version)
/Users/ninawork/entire/devenv/cli/cmd/entire/cli/transcript/compact/parse.go- Compact transcript is a condensed format written alongside full transcript
- Key Insight: metadata also carries
compact_transcript_startoffset (when compact was generated) so external readers can slicetranscript.jsonlrather than reading a separate compact file - See
/Users/ninawork/entire/devenv/cli/api/checkpoint/metadata.go— thecompact_transcriptpath is optional (omitted if no compact was generated)
5. Agent Abstraction & Transcript Parsing Interface
Core Agent Interface
/Users/ninawork/entire/devenv/cli/cmd/entire/cli/agent/agent.go:14-88
Agents implement:
ReadSession(input *HookInput) (*AgentSession, error)— returnsNativeData(raw JSONL bytes)ReadTranscript(sessionRef string) ([]byte, error)— raw transcript read
Optional TranscriptAnalyzer Interface (richer parsing)
/Users/ninawork/entire/devenv/cli/cmd/entire/cli/agent/agent.go:151-168
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type TranscriptAnalyzer interface {
Agent
GetTranscriptPosition(path string) (int, error)
ExtractModifiedFilesFromOffset(path string, startOffset int) (files []string, currentPosition int, err error)
}
Optional SubagentAwareExtractor Interface
/Users/ninawork/entire/devenv/cli/cmd/entire/cli/agent/agent.go:341-353
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type SubagentAwareExtractor interface {
Agent
ExtractAllModifiedFiles(transcriptData []byte, fromOffset int, subagentsDir string) ([]string, error)
CalculateTotalTokenUsage(transcriptData []byte, fromOffset int, subagentsDir string) (*TokenUsage, error)
}
Claude Code Implementation implements all three:
/Users/ninawork/entire/devenv/cli/cmd/entire/cli/agent/claudecode/claude.go:121-148—ReadSession()/Users/ninawork/entire/devenv/cli/cmd/entire/cli/agent/claudecode/claude.go:276-308—GetTranscriptPosition()/Users/ninawork/entire/devenv/cli/cmd/entire/cli/agent/claudecode/transcript.go:383-473— subagent-aware methods
6. Is There Existing Import/Backfill Code?
No historical import from Claude's native projects exists in this repo, but there is backfill infrastructure for incomplete checkpoints:
Transcript Backfill (post-hoc writes)
/Users/ninawork/entire/devenv/cli/cmd/entire/cli/checkpoint/persistent_write.go—backfillTranscript()- Called when a checkpoint's transcript data is missing but other metadata exists
Prompt Backfill (from transcript)
/Users/ninawork/entire/devenv/cli/cmd/entire/cli/lifecycle.go(line ~520+) — readsprompt.txt, falls back to extracting prompts from transcript if missing
Attribution Backfill (post-commit via CheckpointAttribution)
/Users/ninawork/entire/devenv/cli/cmd/entire/cli/checkpoint/persistent_write.go—backfillAttribution()
No "import all pre-existing Claude Code transcripts" command exists, but the architecture already supports:
- Reading
.claude/projects/<slug>/*.jsonlfiles (viaSanitizePathForClaude+GetSessionDir) - Parsing them with the standard
transcript.ParseFromBytes()+CalculateTokenUsage() - Splitting by turn (via
CheckpointTranscriptStartoffset +SliceFromLine()) - Extracting metadata (files, prompts, tokens, skill events, subagents)
Key References Summary
| Aspect | File | Function/Lines |
|---|---|---|
| Path Sanitization | claudecode/claude.go |
SanitizePathForClaude:265-267 |
| Session Dir Resolution | claudecode/claude.go |
GetSessionDir:95-108 |
| Session File Resolution | claudecode/claude.go |
ResolveSessionFile:87-89 |
| Transcript Parsing (bytes) | transcript/parse.go |
ParseFromBytes:17-46 |
| Transcript Parsing (file+offset) | transcript/parse.go |
ParseFromFileAtLine:49-98 |
| Token Usage Extraction | claudecode/transcript.go |
CalculateTokenUsage:140-183 |
| Token Usage (with subagents) | claudecode/transcript.go |
CalculateTotalTokenUsage:383-423 |
| Subagent ID Extraction | claudecode/transcript.go |
ExtractSpawnedAgentIDs:200-269 |
| Subagent File Paths | lifecycle.go |
subagentsDir := filepath.Join(..., "subagents") (~line 930) |
| Slice by Line Offset | transcript/parse.go |
SliceFromLine:110-143 |
| Checkpoint Start Tracking | strategy/manual_commit_hooks.go |
finalizeAllTurnCheckpoints:2729-2880 |
| Compact Transcript Schema | transcript/compact/parse.go |
Types + BuildCondensedEntries:46-114 |
| Agent Interface | agent/agent.go |
Agent:14-88, TranscriptAnalyzer:151-168, SubagentAwareExtractor:341-353 |
This architecture is ready for import: you'd iterate over ~/.claude/projects/<slug>/*.jsonl, parse each as per the Claude Code transcript format, extract metadata (tokens, files, prompts), and split by turn using the existing utilities—no new parsing logic needed.
3w ago·13.2s
Transcript discovery/parsing is mapped. Waiting on the third agent (the checkpoint/commit-attachment model) — that's the one that directly addresses your "orphaned checkpoint" concern.
Comprehensive Checkpoint/Session Storage Model - Exploration Report
Based on my thorough exploration of the checkpoint and session storage architecture in /Users/ninawork/entire/devenv/cli, here are the findings on how the manual-commit strategy manages checkpoints and the critical assumptions about commit linkage.
1. On-Disk / On-Branch Layout
entire/checkpoints/v1 Branch Structure
This is the permanent checkpoint branch (an orphan with no merge base). It stores condensed session logs after user commits.
entire/checkpoints/v1 (orphan branch, no merge history)
├── <checkpoint-id[:2]>/ # Shard directory (first 2 hex chars, 256 max)
│ └── <checkpoint-id[2:]>/ # Full checkpoint directory
│ ├── metadata.json # CheckpointSummary (aggregated, root-level)
│ ├── 0/ # First session (0-based indexing)
│ │ ├── metadata.json # Session-specific Metadata
│ │ ├── full.jsonl # Raw agent transcript
│ │ ├── transcript.jsonl # Compact transcript (pre-sliced to checkpoint portion)
│ │ ├── prompt.txt # User prompts for this checkpoint
│ │ └── content_hash.txt # sha256 hash of full.jsonl
│ ├── 1/ # Second session (concurrent)
│ └── 2/ # Third session...
Key file: /api/checkpoint/metadata.go (lines 394-439) defines CheckpointSummary:
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type CheckpointSummary struct {
CheckpointID id.CheckpointID
CheckpointVersion string
Strategy string
Branch string
CheckpointsCount int
FilesTouched []string
Sessions []SessionFilePaths // Maps session IDs to file paths
TokenUsage *types.TokenUsage
CombinedAttribution *Attribution
}
Session-level metadata (Metadata, lines 286-366) lives in <session-index>/metadata.json:
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type Metadata struct {
CheckpointID id.CheckpointID
SessionID string
Strategy string
CreatedAt time.Time
Branch string
CheckpointsCount int
SaveStepCount int // Number of shadow-branch SaveStep commits (0 = no real work)
FilesTouched []string
Agent types.AgentType
Model string
TurnID string
IsTask bool
ToolUseID string
CheckpointTranscriptStart int // Offset into full.jsonl
// ... token usage, skill events, attribution, summary, kind, review/investigation fields
}
Shadow Branches (Ephemeral)
refs/heads/entire/<base-commit[:7]>-<worktree-hash[:6]>
├── (full worktree files)
└── .entire/metadata/
├── <session-id-1>/
│ ├── full.jsonl
│ ├── prompt.txt
│ └── tasks/<tool-use-id>/
│ ├── checkpoint.json
│ └── incremental/
│ ├── 001-TodoWrite.json
│ ├── 002-Edit.json
│ └── ...
└── <session-id-2>/ # Multiple concurrent sessions
├── full.jsonl
└── ...
Pattern:entire/<commit[:7+]>(-<worktree-hash[:6]>)? (7+ hex chars for commit, optional 6-char worktree suffix)
File:/cmd/entire/cli/strategy/cleanup.go (line 62):
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var shadowBranchPattern = regexp.MustCompile(`^entire/[0-9a-fA-F]{7,}(-[0-9a-fA-F]{6})?$`)
2. Lifecycle: How Sessions Attach to Commits
Phase 1: Live Session (No Commit Yet)
A session starts in .git/entire-sessions/<session-id>.json with state:
BaseCommit: Initial HEAD (used for shadow branch naming)WorktreeID: Worktree identifier (empty for main worktree)- Shadow branch created:
entire/<BaseCommit[:7]>-<WorktreeID[:6]>on firstSaveStep
File:/cmd/entire/cli/strategy/session.go (lines 85-101):
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type State struct {
SessionID string
BaseCommit string // Initial HEAD; used for shadow branch naming
WorktreeID string // Worktree ID (empty for main worktree)
Phase Phase // Lifecycle stage (Idle → Active → Ended)
// ...
}
Phase 2: Prepare Commit Message Hook
Hook:prepare-commit-msg (source: "" | "message" | "template" | "commit" for amend)
File:/cmd/entire/cli/strategy/manual_commit_hooks.go (lines 356-555)
Flow:
- Check if there's an active session with content to condense
- Generate a fresh 12-hex checkpoint ID (or preserve if amending)
- Add
Entire-Checkpoint: <12-hex-id>trailer to commit message - User can remove the trailer (breaks the link) or keep it
Critical code: Lines 465-472:
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checkpointID, err := id.Generate() // Fresh 12-hex ID
// ...
message = addCheckpointTrailer(message, checkpointID) // Adds "Entire-Checkpoint: abc123def456"
Trailer format:/cmd/entire/cli/trailers/trailers.go (lines 38-41, 227):
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const CheckpointTrailerKey = "Entire-Checkpoint"
// Appended as:
fmt.Sprintf("%s\n\n%s: %s\n", message, CheckpointTrailerKey, cpID.String())
Phase 3: Post Commit Hook (Condensation)
Hook:post-commit
File:/cmd/entire/cli/strategy/manual_commit_hooks.go (lines 878-1040)
Flow:
- Extract
Entire-Checkpoint: <id>trailer from HEAD commit message - If trailer absent: update
BaseCommitonly, skip condensation - If trailer present:
- Find active sessions for the worktree
- For each session:
- Condense shadow branch → persistent
entire/checkpoints/v1branch - Store metadata at
<id[:2]>/<id[2:]>/path - Clean up shadow branch after condensation
- Condense shadow branch → persistent
- For each session:
Critical section: Lines 905-914:
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checkpointID, found := trailers.ParseCheckpoint(commit.Message)
if !found {
// No trailer — user removed it or it was never added
// Still update BaseCommit for active sessions so future commits can match
s.postCommitUpdateBaseCommitOnly(ctx, head)
return nil
}
// ... condensation happens here
Condensation Process
File:/cmd/entire/cli/strategy/manual_commit_condensation.go (lines 135-328)
Method:CondenseSession()
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func (s *ManualCommitStrategy) CondenseSession(
ctx context.Context,
repo *git.Repository,
checkpointID id.CheckpointID, // From Entire-Checkpoint trailer
state *SessionState,
) (*CondenseResult, error)
Steps:
Extract shadow branch data: Read from
entire/<BaseCommit>-<WorktreeID>Build WriteOptions (lines 258-289):
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writeOpts := cpkg.WriteOptions{
CheckpointID: checkpointID, // The 12-hex ID from trailer
SessionID: state.SessionID,
EphemeralBranch: shadowBranchName, // Records shadow branch for provenance
Strategy: "manual-commit",
Transcript: redactedTranscript,
// ... token usage, attribution, summary, skill events ...
}
- Write to persistent store (line 293):
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if err := store.Write(writeCtx, cpkg.Session(writeOpts)); err != nil { ... }
This writes to entire/checkpoints/v1:<id[:2]>/<id[2:]>/ path
- Clean up shadow branch (lines 1025-1035):
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for shadowBranchName := range shadowBranchesToDelete {
if uncondensedActiveOnBranch[shadowBranchName] {
// Protect it if other sessions still need it
} else {
// Delete the shadow branch after condensation
}
}
Amend/Rebase Tracking
Hook:post-rewrite (for amend/rebase)
File:/cmd/entire/cli/strategy/manual_commit_hooks.go (lines 189-248)
Purpose: Keep session linkage aligned when commits are rewritten
- Reads stdin pairs:
<old-sha> <new-sha> - Remaps
state.BaseCommitto new hash - Migrates shadow branch to new base commit
3. CRITICAL: Where Code Assumes Commit Linkage
These are the locations where an orphaned (commit-less) checkpoint would break or behave unexpectedly:
A. Shadow Branch Naming & Resolution
File:/cmd/entire/cli/strategy/manual_commit_hooks.go
- Line 1194:
shadowBranchName := getShadowBranchNameForCommit(state.BaseCommit, state.WorktreeID)- ASSUMES:
BaseCommitis a valid git object hash - BREAKS IF:
BaseCommitis empty or a fake ID
- ASSUMES:
- Line 1387:
state.BaseCommit = newHead- Updates
BaseCommiton every commit (amend, post-commit) - ASSUMES: Session is tied to a working commit
- Updates
File:/cmd/entire/cli/strategy/manual_commit_session.go
- Line 216:
if state.BaseCommit == baseCommitSHA { ... }- Finds sessions by matching
BaseCommitto current HEAD - BREAKS IF: Session has no commit to match against
- Finds sessions by matching
- Line 67:
store.ListCheckpoints(ctx, state.BaseCommit, state.WorktreeID, ...)- Lists shadow branch checkpoints by
BaseCommit - BREAKS IF:
BaseCommitdoesn't correspond to a real shadow branch
- Lists shadow branch checkpoints by
B. Rewind Operations
File:/cmd/entire/cli/strategy/manual_commit_rewind.go
- Lines 54-92 (
GetRewindPoints): Searches for sessions by matchingstate.BaseCommit == headHash- ASSUMES: Session's base commit exists in git history
- BREAKS IF: Checkpoint has no associated commit
- Lines 133-210 (
GetLogsOnlyRewindPoints): Scans commit history forEntire-Checkpointtrailers- ASSUMES: Every persistent checkpoint was created by a commit with a trailer
- DEPENDS ON: The link from commit → checkpoint ID
- BREAKS IF: Checkpoint exists with no commit trailer
- Lines 488-499 (
resetShadowBranchToCheckpoint):
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shadowBranchName := getShadowBranchNameForCommit(state.BaseCommit, state.WorktreeID)
- ASSUMES:
BaseCommitis a real git object- BREAKS IF: Session/checkpoint has no associated commit
C. Post-Rewrite Hook (Amend/Rebase)
File:/cmd/entire/cli/strategy/manual_commit_hooks.go
- Lines 189-248 (
PostRewrite):
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newBaseCommit, baseChanged := remapRewriteSHA(state.BaseCommit, rewrites)
- ASSUMES:
BaseCommitappears in the rewrite pairs- BREAKS IF: Checkpoint not tied to rewritable commits
D. Cleanup Logic
File:/cmd/entire/cli/strategy/cleanup.go
- Lines 243-248 (
protectedShadowBranchForSession):
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return getShadowBranchNameForCommit(s.BaseCommit, s.WorktreeID), true
- ASSUMES: Every active session has a valid
BaseCommit- BREAKS IF: Checkpoint imported without
BaseCommit
- BREAKS IF: Checkpoint imported without
- Lines 154-196 (
CleanupPushedShadowBranches):- Only deletes shadow branches for sessions where
Phase == PhaseEnded && FullyCondensed - ASSUMES: Sessions have a lifecycle tied to commits
- BREAKS IF: Orphaned checkpoints exist outside the state machine
- Only deletes shadow branches for sessions where
E. Session State Queries
File:/cmd/entire/cli/strategy/manual_commit_logs.go
- Lines 24-66 (
GetSessionInfo):
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sessions, err := s.findSessionsForCommit(ctx, head.Hash().String())
shadowBranchName := getShadowBranchNameForCommit(state.BaseCommit, state.WorktreeID)
- ASSUMES: All sessions are tied to commits in history
- BREAKS IF: Imported checkpoint has no session state or wrong
BaseCommit
- BREAKS IF: Imported checkpoint has no session state or wrong
F. Commit History Scanning
File:/cmd/entire/cli/strategy/manual_commit_rewind.go
- Lines 179-210 (
GetLogsOnlyRewindPoints):
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iter, err := repo.Log(&git.LogOptions{From: head.Hash(), Order: git.LogOrderCommitterTime})
err = iter.ForEach(func(c *object.Commit) error {
checkpointID, found := trailers.ParseCheckpoint(c.Message) // Extract trailer
if !found { continue }
// Match persistent checkpoint by ID
if info, ok := checkpointInfoMap[checkpointID]; ok { ... }
})
- ASSUMES: Every rewindable persistent checkpoint has a corresponding commit with
Entire-Checkpointtrailer- BREAKS IF: Checkpoint exists on
v1branch but no commit references it - Problem: No way to rewind to commit-less checkpoints this way
- BREAKS IF: Checkpoint exists on
G. Session List / Explain Commands
File:/cmd/entire/cli/strategy/common.go
- Lines 297-317 (
ListCheckpoints):
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store, err := s.getPersistentStore(ctx, repo)
committed, err := store.List(ctx)
return checkpointInfosFromCommitted(committed), nil
Works OK: Persistent checkpoints on
v1don't require commits- But: Listing also includes "logs-only" points (lines 134-231 in
GetRewindPoints)
- But: Listing also includes "logs-only" points (lines 134-231 in
Those scan commit history and require
Entire-Checkpointtrailers- BREAKS IF: Checkpoint exists but is never committed to a rewindable branch
H. Post-Commit Attribution Updates
File:/cmd/entire/cli/strategy/manual_commit_hooks.go
- Lines 1017-1021 (
updateCombinedAttributionForCheckpoint):
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if err := s.updateCombinedAttributionForCheckpoint(ctx, repo, checkpointID, headTree, parentTree, worktreePath)
- ASSUMES: Checkpoint is tied to HEAD commit tree
- BREAKS IF: Checkpoint not tied to a commit tree
4. Checkpoint Identification & Linking
Checkpoint ID Format
Type: 12-hex random identifier (e.g., a3b2c4d5e6f7)
Generated: During prepare-commit-msg hook (lines 467-472 in manual_commit_hooks.go)
File:/cmd/entire/cli/checkpoint/id/id.go
Commit ↔ Checkpoint Linkage
The link is one-way but critical:
- Commit → Checkpoint (via trailer):
- Commit message contains:
Entire-Checkpoint: abc123def456 post-commithook reads the trailer and creates metadata- File:
trailers.ParseCheckpoint(commitMessage)(lines 116-130)
- Commit message contains:
- Checkpoint → Commit (via metadata):
- Persistent metadata stored at
entire/checkpoints/v1:<id[:2]>/<id[2:]>/ - Does NOT record commit hash (only branch name, strategy, files)
- File:
/api/checkpoint/metadata.go(Metadata struct, no CommitHash field)
- Persistent metadata stored at
- Session ↔ Commit (via trailer):
- Shadow branch commits have
Entire-Session: <session-id>trailer - Used to identify which session a checkpoint belongs to
- File:
trailers.ParseSession()(for parsing)
- Shadow branch commits have
Critical insight: Metadata has NO explicit commit hash field. The link is implicit:
- The trailer exists → the checkpoint must have been created by that commit
GetLogsOnlyRewindPointsrelies on scanning commits to find checkpoints
5. Listing & Display Assumptions
entire checkpoint list
File:/cmd/entire/cli/strategy/common.go (lines 297-317)
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func ListCheckpoints(ctx context.Context) ([]CheckpointInfo, error) {
stores, err := checkpoint.Open(ctx, repo, checkpoint.OpenOptions{})
committed, err := stores.Persistent.List(ctx)
return checkpointInfosFromCommitted(committed), nil
}
- Works on: Committed checkpoints on
entire/checkpoints/v1 - Sorts by:
CreatedAtfrom metadata - Does NOT require: Any commit to exist
- Renders OK: Without commit hash (doesn't display commit SHA anyway)
entire session list
Lists active sessions from .git/entire-sessions/:
File:/cmd/entire/cli/strategy/session_state.go
- Works on: Session state files
- Requires: Valid
BaseCommit,WorktreeID - BREAKS IF:
BaseCommitis missing or fake (shadow branch can't be named)
entire checkpoint explain
File:/cmd/entire/cli/strategy/manual_commit_logs.go (lines 24-66, GetSessionInfo)
- Finds sessions by matching
BaseCommitto current HEAD - BREAKS IF: Checkpoint not tied to worktree sessions
6. Summary: Critical Assumptions for Commit-Less Checkpoints
If you import historical agent transcripts as orphaned checkpoints (no git commit), the code will break at these points:
| Location | Issue | Severity |
|---|---|---|
| Shadow branch naming (manual_commit_hooks.go:1194) | Requires valid BaseCommit hash |
CRITICAL |
| Session list (manual_commit_logs.go:24-66) | Can't find sessions without BaseCommit |
CRITICAL |
| Rewind (manual_commit_rewind.go:54-92) | Session lookup by BaseCommit fails |
HIGH |
| Rewind logs-only (manual_commit_rewind.go:179-210) | No commit trailer = not findable | HIGH |
| Cleanup (cleanup.go:243-248) | Can't name shadow branch without BaseCommit |
HIGH |
| Post-rewrite (manual_commit_hooks.go:189-248) | No commits to remap | LOW |
| Checkpoint list (common.go:297-317) | Works fine - no commit needed | N/A |
| Checkpoint explain (manual_commit_logs.go:98-105) | Works fine - reads from persistent store | N/A |
What Would Work for Commit-Less Checkpoints
- Reading checkpoints (explain, list)
- Searching committed metadata
- Token usage queries
- Listing rewind points in the committed store (if you bypass the logs-only scan)
What Would Break
- Rewinding (no shadow branch to restore to, no worktree-linked session)
- Session lifecycle (no
BaseCommit= no shadow branch naming) - Cleanup (can't determine which branches to delete)
- Amend/rebase linkage (no commits to remap)
Architecture Implication for Import Feature
To support import without commits, you'd need:
Fake/synthetic BaseCommit: Generate a stable hash (e.g., SHA-1 of checkpoint metadata) so shadow branches can be named
- Or: Store checkpoints with
BaseCommit == nulland skip shadow-branch operations entirely
- Or: Store checkpoints with
Separate import state machine: Don't reuse session state files; store imported metadata in a read-only import directory (
entire/imports/)Bypass session matching: When rewind/explain is requested for an imported checkpoint, fetch directly from persistent store, not via session lookup
Mark checkpoints as importable: Add a
Kindfield or new field to distinguish imported checkpoints from normal onesRead-only rewind: Restore files from persistent checkpoint tree (like logs-only points do), skip shadow-branch reset
No cleanup concern: Imported checkpoints live only on v1 branch; no shadow branches to clean up
This approach would let you import transcripts while keeping them visually and functionally separate from agent-created checkpoints.
3w ago·15m·6 calls
Confirmed the abstraction fits cleanly. PersistentRefs already separates Read (single ref, store.go:73) from Push ([]ReferenceName). "Local-only" maps exactly onto this: put imports on their own ref that's read but never in Push. Opt-in-to-push later becomes "add that ref to Push."
I now have everything I need. Here's the design.
Design: Import existing Claude Code transcripts
1. Goal & shape
- A hidden/labs command
entire import claude-code [--path DIR] [--dry-run] [--since DATE] [--session ID]... [--force]. entire enableends with an interactive prompt that, when existing transcripts for this repo are detected, calls the same import logic with a default 1-month lookback.- Imported turns become read-only, commit-less ("orphaned") checkpoints, available to
checkpoint list/explain,search,tokens. Not rewindable, not pushed by default.
2. Storage — the orphaned-checkpoint mechanism
- Imported turns are written with the existing persistent store's
Write(same<id[:2]>/<id[2:]>/sharded layout,full.jsonl+ compacttranscript.jsonl+prompt.txt+ metadata), but onto a dedicated local refentire/imports/v1, never the live shadow-branch lifecycle. - No session-state file, no shadow branch, no commit, no
Entire-Checkpointtrailer. Orphaned by construction. - Push:
entire/imports/v1is added toPersistentRefs.Readconsumers but never toPush. Reading commands union two stores (the v1 store + an imports store opened on the imports ref). I chose a second store over makingReadmulti-ref because it keeps the local-only ref explicitly separate and leaves v1 semantics untouched. - Opt-in to push (future): flip the imports ref into the
Pushset (or merge its commits onto v1). Out of scope for this pass beyond leaving the seam clean.
3. Metadata: marker + provenance
- Set the existing
Kindfield to"imported"(joinsagent_review) so list/explain can label and rewind can guard. - Add provenance (per the issue thread) to session metadata: source transcript path, line range, Claude session id, turn uuid, parent uuid, content hash, import-version. This gives idempotency and lets
explaincite the original JSONL honestly.
4. Idempotency & re-runs
- Deterministic checkpoint ID per turn:
idderived fromsha256(sessionID + "/" + turnUUID)(truncated to the 12-hex format). Re-running import skips any turn whose ID already exists on the imports ref;--forcere-writes it.content_hashdetects a changed source turn.
5. Parsing — pure reuse
- Discovery:
claudecode.GetSessionDir(repoRoot)→~/.claude/projects/<SanitizePathForClaude(repoRoot)>/*.jsonl;--pathoverrides. - Per file: parse with
transcript.ParseFromBytes, split into per-user-prompt turns,SliceFromLineeach turn's slice,CalculateTotalTokenUsage(with subagentagent-<id>.jsonlrollup), extract model/timestamps/cwd/prompt.--since/--sessionfilter;--sincedefaults to ~30 days for the enable prompt. - Redaction: run each imported turn through the standard redaction pipeline at import time so data-at-rest is already clean and a future opt-in-to-push is safe.
6. Rewind guard (the real code gap)
rewind/GetRewindPointsnaturally won't surface imports (they scan commit trailers, which imports lack). Add an explicit guard: if a rewind target resolves to aKind == "imported"checkpoint, refuse with "imported history is read-only and not rewindable." I'll also do a targeted check thatlist/explaindisplay logic never assumes a backing commit (low-risk, reading from v1/imports works without one).
7. The enable prompt
- After the telemetry prompt in
runEnableInteractive(setup.go), if interactive and transcripts exist: count turns in the last month and askhuh.NewConfirmviaNewAccessibleForm— "Found N past Claude sessions for this repo. Import them as local, read-only history? (stays on your machine)". Respect--yes(default no, to be conservative for a privacy-touching import) andCanPromptInteractively().
8. Testing
- Unit: discovery/slug, per-turn splitting, deterministic IDs + idempotency, provenance, redaction-applied, rewind-refusal. Integration: import into a temp repo, assert imports land on
entire/imports/v1, are listed/explained, are absent fromPush, and survive a--dry-runas no-op. Vogon canary for the enable-prompt path.
Two notes on what I'm deliberately not doing (YAGNI, matching your "not necessary for first pass"): no attaching imports to Claude co-authored commits, and no other agents (codex/gemini/etc.) — claude-code only, though the command name leaves room.
Does this design look right? In particular: (a) the separate entire/imports/v1 ref + second-store union, and (b) applying full redaction at import time even though local-only. If both are good I'll write it up as a spec and then a plan.
Looks good
3w ago·14m·2 calls
Spec written to docs/superpowers/specs/2026-06-25-import-claude-code-transcripts-design.md.
Self-review: no placeholders/TBDs, sections are internally consistent (storage ref ↔ push topology ↔ rewind guard all align), scope is bounded to a single plan. One adaptation from the skill's default: I did not auto-commit the doc, since your standing instruction is to commit only when explicitly asked — say the word and I'll commit it.
Please review the spec and let me know if you want any changes before I turn it into an implementation plan. A couple of points worth a second look:
- The
entire/imports/v1ref naming and the second-store union (vs. makingReadmulti-ref). - Default No on the enable prompt — conservative, but it means the common path imports nothing unless the user opts in each enable.
The command should prompt the user to ask if they want to push up the checkpoints. The command should also specify that when it found N claude sessions, it should be "for the past month" (the timespan should be a one month lookback for now). Ensure there are no issues with list or explain. They should filter out Kind: imported if they're unsupported.
3w ago
The command should specify that when it found N claude sessions, it should be "for the past month" (the timespan should be a one month lookback for now). Ensure there are no issues with list or explain. They should filter out Kind: imported if they're unsupported.
Eventually, push up will be an option, but for first pass, it's local-only. We shouldn't engineer ourselves into a box on this: it should be flexible enough to allow pushing up.
3w ago·12m·10 calls
Spec updated to reflect all three points. Summary of the changes:
"Past month" framing — the enable prompt now reads "Found N past Claude sessions for this repo from the past month." The one-month lookback is the explicit default for both the prompt and the command's
--since, with "from the past month" called out as required so the count is never read as full history.No issues with list/explain + filter
Kind: importedwhere unsupported — added a Kind-aware filtering section with two layers: (a) structural — imports live on a separate ref, so existing v1 consumers (cleanup, rewind, lifecycle) never see them; (b) defensive — a shared filter helper next tocheckpointInfosFromCommittedso supported commands (list/explain/search/tokens) render imported entries with a label, while every other consumer dropsKind == "imported". Tests now includecleanupnot seeing imports and a "merged onto v1" case proving unsupported consumers still filter them.Local-only first pass, but no box — reframed the push section as "Push topology and the no-box constraint" with two concrete future paths (push the imports ref, or merge onto v1), and made clear the
Kindfilter is exactly what keeps both paths safe. No push prompt/--pushflag ships now, but the seam is explicit.
Please review the spec at docs/superpowers/specs/2026-06-25-import-claude-code-transcripts-design.md. If it's good, I'll hand it to the writing-plans skill to produce the implementation plan (and I can commit the spec then, or now if you'd like).
We don't need --since for now. What do you mean "no box"?
3w ago·1m·11 calls
Done. To recap your two points:
- "No box" — explained above; it was just my shorthand for your "don't engineer ourselves into a box." Renamed the section to "Push topology (keeping push cheap to add later)" and dropped the jargon throughout.
--sinceremoved — the command is nowentire import claude-code [--path DIR] [--dry-run] [--session ID]... [--force], and the one-month lookback is a fixed internal constant used by both the command and the enable prompt.
The push design itself is unchanged: still local-only this pass, with the two future paths intact.
Spec is at docs/superpowers/specs/2026-06-25-import-claude-code-transcripts-design.md. Good to review — if it's right, I'll hand it to writing-plans for the implementation plan (and commit the spec whenever you want).
What does --force entail here? I think we can remove that
3w ago·40.8s·5 calls
--force removed. Command is now entire import claude-code [--path DIR] [--dry-run] [--session ID]..., and re-running is purely additive/idempotent (skip already-imported turns). content_hash stays as provenance for honest explain citations and logs a mismatch rather than rewriting.
Spec is current at docs/superpowers/specs/2026-06-25-import-claude-code-transcripts-design.md. Anything else to adjust, or shall I hand it to writing-plans for the implementation plan?
Implementation plan yes
3w ago·13.7s·1 call
I'll hand the spec to the writing-plans skill.
Base directory for this skill: /Users/ninawork/.claude/plugins/cache/claude-plugins-official/superpowers/6.0.3/skills/writing-plans
Writing Plans
Overview
Write comprehensive implementation plans assuming the engineer has zero context for our codebase and questionable taste. Document everything they need to know: which files to touch for each task, code, testing, docs they might need to check, how to test it. Give them the whole plan as bite-sized tasks. DRY. YAGNI. TDD. Frequent commits.
Assume they are a skilled developer, but know almost nothing about our toolset or problem domain. Assume they don't know good test design very well.
Announce at start: "I'm using the writing-plans skill to create the implementation plan."
Context: If working in an isolated worktree, it should have been created via the superpowers:using-git-worktrees skill at execution time.
Save plans to:docs/superpowers/plans/YYYY-MM-DD-<feature-name>.md
- (User preferences for plan location override this default)
Scope Check
If the spec covers multiple independent subsystems, it should have been broken into sub-project specs during brainstorming. If it wasn't, suggest breaking this into separate plans — one per subsystem. Each plan should produce working, testable software on its own.
File Structure
Before defining tasks, map out which files will be created or modified and what each one is responsible for. This is where decomposition decisions get locked in.
- Design units with clear boundaries and well-defined interfaces. Each file should have one clear responsibility.
- You reason best about code you can hold in context at once, and your edits are more reliable when files are focused. Prefer smaller, focused files over large ones that do too much.
- Files that change together should live together. Split by responsibility, not by technical layer.
- In existing codebases, follow established patterns. If the codebase uses large files, don't unilaterally restructure - but if a file you're modifying has grown unwieldy, including a split in the plan is reasonable.
This structure informs the task decomposition. Each task should produce self-contained changes that make sense independently.
Task Right-Sizing
A task is the smallest unit that carries its own test cycle and is worth a fresh reviewer's gate. When drawing task boundaries: fold setup, configuration, scaffolding, and documentation steps into the task whose deliverable needs them; split only where a reviewer could meaningfully reject one task while approving its neighbor. Each task ends with an independently testable deliverable.
Bite-Sized Task Granularity
Each step is one action (2-5 minutes):
- "Write the failing test" - step
- "Run it to make sure it fails" - step
- "Implement the minimal code to make the test pass" - step
- "Run the tests and make sure they pass" - step
- "Commit" - step
Plan Document Header
Every plan MUST start with this header:
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# [Feature Name] Implementation Plan
> **For agentic workers:** REQUIRED SUB-SKILL: Use superpowers:subagent-driven-development (recommended) or superpowers:executing-plans to implement this plan task-by-task. Steps use checkbox (`- [ ]`) syntax for tracking.
**Goal:** [One sentence describing what this builds]
**Architecture:** [2-3 sentences about approach]
**Tech Stack:** [Key technologies/libraries]
## Global Constraints
[The spec's project-wide requirements — version floors, dependency limits,\
naming and copy rules, platform requirements — one line each, with exact\
values copied verbatim from the spec. Every task's requirements implicitly\
include this section.]
---
Task Structure
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### Task N: [Component Name]
**Files:**
- Create: `exact/path/to/file.py`
- Modify: `exact/path/to/existing.py:123-145`
- Test: `tests/exact/path/to/test.py`
**Interfaces:**
- Consumes: [what this task uses from earlier tasks — exact signatures]
- Produces: [what later tasks rely on — exact function names, parameter\
and return types. A task's implementer sees only their own task; this\
block is how they learn the names and types neighboring tasks use.]
- [ ] **Step 1: Write the failing test**
```python
def test_specific_behavior():
result = function(input)
assert result == expected
```
- [ ] **Step 2: Run test to verify it fails**
Run: `pytest tests/path/test.py::test_name -v`
Expected: FAIL with "function not defined"
- [ ] **Step 3: Write minimal implementation**
```python
def function(input):
return expected
```
- [ ] **Step 4: Run test to verify it passes**
Run: `pytest tests/path/test.py::test_name -v`
Expected: PASS
- [ ] **Step 5: Commit**
```bash
git add tests/path/test.py src/path/file.py
git commit -m "feat: add specific feature"
```
No Placeholders
Every step must contain the actual content an engineer needs. These are plan failures — never write them:
- "TBD", "TODO", "implement later", "fill in details"
- "Add appropriate error handling" / "add validation" / "handle edge cases"
- "Write tests for the above" (without actual test code)
- "Similar to Task N" (repeat the code — the engineer may be reading tasks out of order)
- Steps that describe what to do without showing how (code blocks required for code steps)
- References to types, functions, or methods not defined in any task
Remember
- Exact file paths always
- Complete code in every step — if a step changes code, show the code
- Exact commands with expected output
- DRY, YAGNI, TDD, frequent commits
Self-Review
After writing the complete plan, look at the spec with fresh eyes and check the plan against it. This is a checklist you run yourself — not a subagent dispatch.
1. Spec coverage: Skim each section/requirement in the spec. Can you point to a task that implements it? List any gaps.
2. Placeholder scan: Search your plan for red flags — any of the patterns from the "No Placeholders" section above. Fix them.
3. Type consistency: Do the types, method signatures, and property names you used in later tasks match what you defined in earlier tasks? A function called clearLayers() in Task 3 but clearFullLayers() in Task 7 is a bug.
If you find issues, fix them inline. No need to re-review — just fix and move on. If you find a spec requirement with no task, add the task.
Execution Handoff
After saving the plan, offer execution choice:
"Plan complete and saved to docs/superpowers/plans/<filename>.md. Two execution options:
1. Subagent-Driven (recommended) - I dispatch a fresh subagent per task, review between tasks, fast iteration
2. Inline Execution - Execute tasks in this session using executing-plans, batch execution with checkpoints
Which approach?"
If Subagent-Driven chosen:
- REQUIRED SUB-SKILL: Use superpowers:subagent-driven-development
- Fresh subagent per task + two-stage review
If Inline Execution chosen:
- REQUIRED SUB-SKILL: Use superpowers:executing-plans
- Batch execution with checkpoints for review
3w ago·1m·3 calls
Three extraction agents are running in parallel to pull the exact signatures for the store/metadata API, transcript parsing/redaction, and the enable flow + command registration + read-command call sites. I'll write the implementation plan once they return.
EXACT VERBATIM SIGNATURES AND STRUCT DEFINITIONS
1. Checkpoint Persistent Store API
cmd/entire/cli/checkpoint/open.go: lines 9-62
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// OpenOptions configures Open. The zero value uses the default committed-ref
// topology and attaches no blob fetcher.
type OpenOptions struct {
// BlobFetcher is the CLI-level on-demand blob fetcher. The checkpoint
// package cannot resolve it itself, so the CLI layer injects it here and
// Open attaches it to the constructed store(s). nil leaves on-demand
// fetching off.
BlobFetcher BlobFetchFunc
// Refs overrides the default committed-ref topology. A non-nil value wins,
// e.g. attach pins reads to Primary via PrimaryAsRead().
Refs *PersistentRefs
}
// Stores is the facade returned by Open: the persistent store plus the git-only
// ephemeral (shadow-branch) capability and resolved committed-ref topology.
type Stores struct {
// Persistent is the committed store that serves permanent reads and writes.
Persistent PersistentStore
ephemeral EphemeralStore
refs PersistentRefs
}
// Open resolves the checkpoint storage topology and constructs the backing
// store. It keeps ref resolution and blob-fetcher wiring in one place.
//
//nolint:unparam // Callers treat store construction as fallible at this boundary; the git backend has no fallible setup today.
func Open(ctx context.Context, repo *git.Repository, opts OpenOptions) (*Stores, error) {
refs := resolveOpenRefs(ctx, opts)
store := NewGitStore(repo, refs)
if opts.BlobFetcher != nil {
store.SetBlobFetcher(opts.BlobFetcher)
}
return &Stores{
Persistent: store,
ephemeral: newEphemeralStore(repo, refs),
refs: refs,
}, nil
}
// Refs returns the resolved committed-ref topology.
func (s *Stores) Refs() PersistentRefs { return s.refs }
cmd/entire/cli/checkpoint/store.go: lines 48-53
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// NewGitStore creates a checkpoint store backed by the given git repository
// and committed-metadata topology. Pass DefaultV1Refs() for the v1-only default
// or ResolveRefs(ctx) in code paths that honor settings.
func NewGitStore(repo *git.Repository, refs PersistentRefs) *GitStore {
return &GitStore{repo: repo, refs: refs}
}
cmd/entire/cli/checkpoint/persistent_refs.go: lines 12-26
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// PersistentRefs is the committed-metadata ref topology.
type PersistentRefs struct {
Primary plumbing.ReferenceName
Read plumbing.ReferenceName
Push []plumbing.ReferenceName
}
// DefaultV1Refs returns the v1-only topology.
func DefaultV1Refs() PersistentRefs {
v1Branch := plumbing.NewBranchReferenceName(paths.MetadataBranchName)
return PersistentRefs{
Primary: v1Branch,
Read: v1Branch,
Push: []plumbing.ReferenceName{v1Branch},
}
}
cmd/entire/cli/checkpoint/persistent_write.go: lines 8-25
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// Write dispatches a persistent write request to the matching git operation.
// The request types and Writer interface are defined in the api/checkpoint
// contract (re-exported here via aliases). Unknown request types are a
// programmer error, surfaced rather than ignored.
func (s *GitStore) Write(ctx context.Context, req WriteRequest) error {
switch r := req.(type) {
case Session:
return s.writeSession(ctx, WriteOptions(r))
case SessionTranscript:
return s.backfillTranscript(ctx, UpdateOptions(r))
case SessionSummary:
return s.backfillSummary(ctx, r.CheckpointID, r.Summary)
case CheckpointAttribution:
return s.backfillAttribution(ctx, r.CheckpointID, r.Attribution)
default:
return fmt.Errorf("checkpoint: unsupported write request %T", req)
}
}
2. WriteOptions and Metadata API
api/checkpoint/metadata.go: lines 14-168
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// WriteOptions contains options for writing a persistent checkpoint.
type WriteOptions struct {
// CheckpointID is the stable 12-hex-char identifier
CheckpointID id.CheckpointID
// SessionID is the session identifier
SessionID string
// CreatedAt is when the checkpoint was originally created.
// When zero, writers use the current time.
CreatedAt time.Time
// Strategy is the name of the strategy that created this checkpoint
Strategy string
// Branch is the branch name where the checkpoint was created (empty if detached HEAD)
Branch string
// Transcript is the session transcript content (full.jsonl).
// Must be pre-redacted (via redact.JSONLBytes or redact.AlreadyRedacted for trusted sources).
Transcript redact.RedactedBytes
// Prompts contains the raw user prompts from the session. Run through
// redactedJoinedPrompts before persisting — the writer does this
// inside writeSessionToSubdirectory.
Prompts []string
// FilesTouched are files modified during the session
FilesTouched []string
// CheckpointsCount is the displayed "steps" count for this session: the number
// of user prompts attributed to this checkpoint (floored at 1). Despite the
// historical name/JSON tag, it is no longer a count of checkpoints.
CheckpointsCount int
// SaveStepCount is the number of SaveStep-recorded steps (shadow-branch
// commits) for this session. Distinct from CheckpointsCount (the displayed
// prompt count): this is the honest "did real checkpoint work happen" signal
// used to gate combined attribution. 0 means a commit-only / fallback session.
SaveStepCount int
// EphemeralBranch is the shadow branch name (for manual-commit strategy)
EphemeralBranch string
// AuthorName is the name to use for commits
AuthorName string
// AuthorEmail is the email to use for commits
AuthorEmail string
// MetadataDir is a directory containing additional metadata files to copy
// If set, all files in this directory will be copied to the checkpoint path
// This is useful for copying task metadata files, subagent transcripts, etc.
MetadataDir string
// Task checkpoint fields (for task/subagent checkpoints)
IsTask bool // Whether this is a task checkpoint
ToolUseID string // Tool use ID for task checkpoints
// Additional task checkpoint fields for subagent checkpoints
AgentID string // Subagent identifier
CheckpointUUID string // UUID for transcript truncation when rewinding
TranscriptPath string // Path to session transcript file (alternative to in-memory Transcript)
SubagentTranscriptPath string // Path to subagent's transcript file
// Incremental checkpoint fields
IsIncremental bool // Whether this is an incremental checkpoint
IncrementalSequence int // Checkpoint sequence number
IncrementalType string // Tool type that triggered this checkpoint
IncrementalData []byte // Tool input payload for this checkpoint
// Commit message fields (used for task checkpoints)
CommitSubject string // Subject line for the metadata commit (overrides default)
// Agent identifies the agent that created this checkpoint (e.g., "Claude Code", "Cursor")
Agent types.AgentType
// Model is the LLM model used during the session (e.g., "claude-sonnet-4-20250514")
Model string
// TurnID correlates checkpoints from the same agent turn.
TurnID string
// Transcript position at checkpoint start - tracks what was added during this checkpoint
TranscriptIdentifierAtStart string // Last identifier when checkpoint started (UUID for Claude, message ID for Gemini)
CheckpointTranscriptStart int // Transcript line offset at start of this checkpoint's data
// CheckpointTranscriptStart is written to both Metadata.CheckpointTranscriptStart
// and the deprecated Metadata.TranscriptLinesAtStart for backward compatibility.
// TokenUsage contains the token usage for this checkpoint
TokenUsage *types.TokenUsage
// SkillEvents records explicit native skill signals observed in this session.
SkillEvents []types.SkillEvent
// SessionMetrics contains hook-provided session metrics (duration, turns, context usage)
SessionMetrics *SessionMetrics
// Attribution is line-level attribution calculated at commit time
// comparing checkpoint tree (agent work) to committed tree (may include human edits)
Attribution *Attribution
// PromptAttributionsJSON is the raw PromptAttributions data, JSON-encoded.
// Persisted for diagnostic purposes — shows exactly which prompt recorded
// which "user" lines, enabling root cause analysis of attribution bugs.
// Uses json.RawMessage to avoid importing session package.
PromptAttributionsJSON json.RawMessage
// CombinedAttribution is holistic attribution across all sessions.
// Used during migration to preserve v1 root summary attribution.
// During normal condensation this is nil (computed post-commit via a CheckpointAttribution write).
CombinedAttribution *Attribution
// Summary is an optional AI-generated summary for this checkpoint.
// This field may be nil when:
// - summarization is disabled in settings
// - summary generation failed (non-blocking, logged as warning)
// - the transcript was empty or too short to summarize
// - the checkpoint predates the summarization feature
Summary *Summary
// Kind identifies the session purpose (e.g., "agent_review"). Empty for normal sessions.
Kind string
// ReviewSkills is the snapshot of skills used (only meaningful when Kind is a review kind).
// May be empty when a review is attached post-hoc without declared skills.
ReviewSkills []string
// ReviewPrompt is the actual text of the review request (composed prompt
// for spawn, first user prompt for attach). Only meaningful when Kind is
// a review kind.
ReviewPrompt string
// HasReview is set by the caller when this session should mark its
// checkpoint as reviewed. The caller computes this (e.g. via
// session.Kind.IsReview) because checkpoint can't import session
// — the session package imports checkpoint, creating a cycle.
HasReview bool
// InvestigateRunID is the 12-hex-char ID of the parent investigation
// run (only meaningful when Kind is an investigate kind).
InvestigateRunID string
// InvestigateTopic is the human-readable topic the investigation was
// asked to investigate (only meaningful when Kind is an investigate
// kind).
InvestigateTopic string
// HasInvestigation is set by the caller when this session should mark
// its checkpoint as part of an investigation. The caller computes this
// (e.g. via session.Kind.IsInvestigate) because checkpoint can't import
// session — the session package imports checkpoint, creating a cycle.
HasInvestigation bool
}
api/checkpoint/metadata.go: lines 286-366
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// Metadata contains the metadata stored in metadata.json for each checkpoint.
type Metadata struct {
CLIVersion string `json:"cli_version,omitempty"`
CheckpointID id.CheckpointID `json:"checkpoint_id"`
SessionID string `json:"session_id"`
Strategy string `json:"strategy"`
CreatedAt time.Time `json:"created_at"`
Branch string `json:"branch,omitempty"` // Branch where checkpoint was created (empty if detached HEAD)
CheckpointsCount int `json:"checkpoints_count"`
// SaveStepCount is the number of SaveStep-recorded steps for this session.
// Honest "real checkpoint work happened" signal (0 = commit-only/fallback
// session), kept separate from the displayed CheckpointsCount prompt count.
// Added after CheckpointsCount stopped being a reliable did-SaveStep-run signal.
SaveStepCount int `json:"save_step_count,omitempty"`
FilesTouched []string `json:"files_touched"`
// Agent identifies the agent that created this checkpoint (e.g., "Claude Code", "Cursor")
Agent types.AgentType `json:"agent,omitempty"`
// Model is the LLM model used during the session (e.g., "claude-sonnet-4-20250514").
// Always written to metadata (empty string when unknown) so consumers can rely on the field's presence.
Model string `json:"model"`
// TurnID correlates checkpoints from the same agent turn.
// When a turn's work spans multiple commits, each gets its own checkpoint
// but they share the same TurnID for future aggregation/deduplication.
TurnID string `json:"turn_id,omitempty"`
// Task checkpoint fields (only populated for task checkpoints)
IsTask bool `json:"is_task,omitempty"`
ToolUseID string `json:"tool_use_id,omitempty"`
// Transcript position at checkpoint start - tracks what was added during this checkpoint
TranscriptIdentifierAtStart string `json:"transcript_identifier_at_start,omitempty"` // Last identifier when checkpoint started (UUID for Claude, message ID for Gemini)
CheckpointTranscriptStart int `json:"checkpoint_transcript_start,omitempty"` // Transcript line offset at start of this checkpoint's data
// Deprecated: Use CheckpointTranscriptStart instead. Written for backward compatibility with older CLI versions.
TranscriptLinesAtStart int `json:"transcript_lines_at_start,omitempty"`
// Token usage for this checkpoint
TokenUsage *types.TokenUsage `json:"token_usage,omitempty"`
// SkillEvents records explicit native skill signals observed in this session.
// Consumers use these anchors to collapse skill-related raw transcript events.
SkillEventsVersion int `json:"skill_events_version,omitempty"`
SkillEvents []types.SkillEvent `json:"skill_events,omitempty"`
// SessionMetrics contains hook-provided session metrics (duration, turns, context usage).
// Populated for agents that provide these metrics via hooks (e.g., Cursor).
SessionMetrics *SessionMetrics `json:"session_metrics,omitempty"`
// AI-generated summary of the checkpoint
Summary *Summary `json:"summary,omitempty"`
// Attribution is line-level attribution calculated at commit time
Attribution *Attribution `json:"initial_attribution,omitempty"`
// PromptAttributions is the raw per-prompt attribution data used to compute Attribution.
// Diagnostic field — shows which prompt recorded which "user" lines.
PromptAttributions json.RawMessage `json:"prompt_attributions,omitempty"`
// Kind identifies the session purpose (e.g., "agent_review"). Empty for normal sessions.
Kind string `json:"kind,omitempty"`
// ReviewSkills lists the review skills that were run (only set when Kind is a review kind).
// May be empty when a review was attached post-hoc without declared skills.
ReviewSkills []string `json:"review_skills,omitempty"`
// ReviewPrompt is the actual text of the review request (composed prompt
// for spawn, first user prompt for attach). Only set when Kind is a
// review kind.
ReviewPrompt string `json:"review_prompt,omitempty"`
// InvestigateRunID is the 12-hex-char ID of the parent investigation
// run. Only set when Kind is an investigate kind.
InvestigateRunID string `json:"investigate_run_id,omitempty"`
// InvestigateTopic is the human-readable topic the investigation was
// asked to investigate. Only set when Kind is an investigate kind.
InvestigateTopic string `json:"investigate_topic,omitempty"`
}
api/checkpoint/metadata.go: lines 378-392
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// SessionFilePaths contains the absolute paths to session files from the git tree root.
// Paths include the full checkpoint path prefix (e.g., "/a1/b2c3d4e5f6/1/metadata.json").
// Used in CheckpointSummary.Sessions to map session IDs to their file locations.
type SessionFilePaths struct {
Metadata string `json:"metadata"`
// Transcript points at the raw full.jsonl, which CLI read paths
// (rewind/resume/explain) resolve by filename.
Transcript string `json:"transcript,omitempty"`
// CompactTranscript points at the compact transcript.jsonl when one was
// generated alongside full.jsonl. Omitted otherwise (non-compactable,
// empty, or oversized transcripts, and older CLI versions).
CompactTranscript string `json:"compact_transcript,omitempty"`
ContentHash string `json:"content_hash,omitempty"`
Prompt string `json:"prompt"`
}
api/checkpoint/metadata.go: lines 413-439
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type CheckpointSummary struct {
CLIVersion string `json:"cli_version,omitempty"`
CheckpointVersion string `json:"checkpoint_version,omitempty"`
CheckpointID id.CheckpointID `json:"checkpoint_id"`
Strategy string `json:"strategy"`
Branch string `json:"branch,omitempty"`
CheckpointsCount int `json:"checkpoints_count"`
FilesTouched []string `json:"files_touched"`
Sessions []SessionFilePaths `json:"sessions"`
TokenUsage *types.TokenUsage `json:"token_usage,omitempty"`
CombinedAttribution *Attribution `json:"combined_attribution,omitempty"`
// HasReview is the umbrella "any review happened" flag: true when at least
// one session in this checkpoint has a review-kind Kind (currently
// "agent_review"). When new review kinds are introduced they should also
// cause this flag to be set so callers can keep asking "was this reviewed
// in any way?" without caring about the variant.
HasReview bool `json:"has_review,omitempty"`
// HasInvestigation is the umbrella "any investigation happened" flag:
// true when at least one session in this checkpoint has an
// investigate-kind Kind (currently "agent_investigate"). When new
// investigate kinds are introduced they should also cause this flag to
// be set so callers can keep asking "was this investigated in any way?"
// without caring about the variant.
HasInvestigation bool `json:"has_investigation,omitempty"`
}
api/checkpoint/metadata.go: lines 232-265
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type CheckpointInfo struct {
// CheckpointID is the stable 12-hex-char identifier
CheckpointID id.CheckpointID
// SessionID is the session identifier (most recent session for multi-session checkpoints)
SessionID string
// CreatedAt is when the checkpoint was created
CreatedAt time.Time
// CheckpointsCount is the aggregate displayed "steps" count across sessions:
// the sum of per-session prompt-window counts. Despite the historical name,
// it is not a count of checkpoint records.
CheckpointsCount int
// FilesTouched are files modified during all sessions
FilesTouched []string
// Agent identifies the agent that created this checkpoint
Agent types.AgentType
// IsTask indicates if this is a task checkpoint
IsTask bool
// ToolUseID is the tool use ID for task checkpoints
ToolUseID string
// Multi-session support
SessionCount int // Number of sessions (1 if single session)
SessionIDs []string // All session IDs that contributed
}
3. Kind Constants (Session Purpose)
cmd/entire/cli/session/state.go: lines 38-61
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// Kind identifies the purpose of a session. Empty means "normal" (legacy
// sessions + every session that isn't a review). Callers must not rely on
// Kind being set unless they specifically want to branch on it.
//
// Kind is a discriminator — it distinguishes review variants at a per-session
// granularity. The checkpoint-level HasReview flag remains an umbrella that
// any review-kind session should set (so future review kinds like manual
// review can be added without changing summary-shape).
type Kind string
const (
// KindAgentReview tags a session created by `entire review` (agent-driven
// review). Future review kinds (e.g., manual review) should be defined as
// distinct Kind values AND added to Kind.IsReview so the checkpoint's
// HasReview umbrella flag keeps covering them.
KindAgentReview Kind = "agent_review"
// KindAgentInvestigate tags a session created by `entire investigate`
// (agent-driven investigation). A session is review OR investigate, not
// both — Kind is single-valued. Future investigate kinds should be added
// to Kind.IsInvestigate so the checkpoint's HasInvestigation umbrella
// flag keeps covering them.
KindAgentInvestigate Kind = "agent_investigate"
)
4. Attribution and TokenUsage Types
api/checkpoint/metadata.go: lines 475-496
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// Attribution captures line-level attribution metrics at commit time.
// This is a point-in-time snapshot comparing the checkpoint tree (agent work)
// against the committed tree (may include human edits).
//
// Attribution Metrics:
// - TotalCommitted keeps the historical "net additions" view for compatibility
// - TotalLinesChanged measures total committed line changes (adds + modifies + removes)
// - AgentPercentage represents "of the lines changed in this commit, what percentage came from the agent"
// - AgentRemoved tracks committed deletions performed by the agent
type Attribution struct {
CalculatedAt time.Time `json:"calculated_at"`
AgentLines int `json:"agent_lines"` // Lines added by agent that remain in the commit
AgentRemoved int `json:"agent_removed"` // Lines removed by agent that remain removed in the commit
HumanAdded int `json:"human_added"` // Lines added by human (excluding modifications)
HumanModified int `json:"human_modified"` // Lines modified by human (estimate: min(added, removed))
HumanRemoved int `json:"human_removed"` // Lines removed by human (excluding modifications)
TotalCommitted int `json:"total_committed"` // Net additions in commit (legacy additions-focused metric)
TotalLinesChanged int `json:"total_lines_changed"` // Total committed line changes (adds + modifies + removes)
AgentPercentage float64 `json:"agent_percentage"` // (agent_lines + agent_removed) / total_lines_changed * 100
MetricVersion int `json:"metric_version,omitempty"` // 0/absent = legacy (additions-only %), 2 = changed-lines %
}
(TokenUsage is in cmd/entire/cli/agent/types, not in the checkpoint package directly)
5. Strategy Package CheckpointInfo
cmd/entire/cli/strategy/manual_commit_types.go: lines 34-47
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// CheckpointInfo represents checkpoint metadata stored on the sessions branch.
// Metadata is stored at sharded path: <checkpoint_id[:2]>/<checkpoint_id[2:]>/
type CheckpointInfo struct {
CheckpointID id.CheckpointID `json:"checkpoint_id"` // 12-hex-char from Entire-Checkpoint trailer, used as directory path
SessionID string `json:"session_id"`
CreatedAt time.Time `json:"created_at"`
CheckpointsCount int `json:"checkpoints_count"`
FilesTouched []string `json:"files_touched"`
Agent types.AgentType `json:"agent,omitempty"` // Human-readable agent name (e.g., "Claude Code")
IsTask bool `json:"is_task,omitempty"`
ToolUseID string `json:"tool_use_id,omitempty"`
SessionCount int `json:"session_count,omitempty"` // Number of sessions (1 if omitted)
SessionIDs []string `json:"session_ids,omitempty"` // All session IDs in this checkpoint
}
cmd/entire/cli/strategy/common.go: lines 297-339
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// ListCheckpoints returns all checkpoints from committed checkpoint storage.
func ListCheckpoints(ctx context.Context) ([]CheckpointInfo, error) {
repo, err := OpenRepository(ctx)
if err != nil {
return nil, fmt.Errorf("failed to open git repository: %w", err)
}
defer repo.Close()
// Warn (once per process) if metadata branches are disconnected
WarnIfMetadataDisconnected()
stores, err := checkpoint.Open(ctx, repo, checkpoint.OpenOptions{})
if err != nil {
return nil, fmt.Errorf("open checkpoint store: %w", err)
}
committed, err := stores.Persistent.List(ctx)
if err != nil {
return nil, fmt.Errorf("failed to list committed checkpoints: %w", err)
}
return checkpointInfosFromCommitted(committed), nil
}
func checkpointInfosFromCommitted(committed []checkpoint.CheckpointInfo) []CheckpointInfo {
result := make([]CheckpointInfo, 0, len(committed))
for _, c := range committed {
result = append(result, CheckpointInfo{
CheckpointID: c.CheckpointID,
SessionID: c.SessionID,
CreatedAt: c.CreatedAt,
CheckpointsCount: c.CheckpointsCount,
FilesTouched: c.FilesTouched,
Agent: c.Agent,
IsTask: c.IsTask,
ToolUseID: c.ToolUseID,
SessionCount: c.SessionCount,
SessionIDs: c.SessionIDs,
})
}
sort.Slice(result, func(i, j int) bool {
return result[i].CreatedAt.After(result[j].CreatedAt)
})
return result
}
6. Paths Constants
cmd/entire/cli/paths/paths.go: lines 29-42
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PromptFileName = "prompt.txt"
TranscriptFileName = "full.jsonl"
TranscriptFileNameLegacy = "full.log"
// CompactTranscriptFileName is the compact transcript stored alongside
// full.jsonl for each session. Not all checkpoints have a compact transcript.
CompactTranscriptFileName = "transcript.jsonl"
MetadataFileName = "metadata.json"
ContentHashFileName = "content_hash.txt"
// MetadataBranchName is the orphan branch used by manual-commit strategy to store metadata
const MetadataBranchName = "entire/checkpoints/v1"
```</result>
<usage><subagent_tokens>72000</subagent_tokens><tool_uses>23</tool_uses><duration_ms>105210</duration_ms></usage>
</task-notification>
3w ago·30.7s
Store/metadata API extracted. Two important facts for the plan: WriteOptions.Transcript is redact.RedactedBytes (so imports must call the redaction entry point — redact.JSONLBytes), and CheckpointInfo carries no Kind field today — I'll need to surface Kind through it so supported commands can label imported entries and unsupported ones can filter. Waiting on the transcript/redaction and enable-flow extractions.
EXACT VERBATIM SIGNATURES & CODE EXCERPTS
1. Claude Code Agent Session Management
File: cmd/entire/cli/agent/claudecode/claude.go
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// Lines 265-267
func SanitizePathForClaude(path string) string {
return nonAlphanumericRegex.ReplaceAllString(path, "-")
}
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// Lines 94-108
func (c *ClaudeCodeAgent) GetSessionDir(repoPath string) (string, error) {
// Check for test environment override
if override := os.Getenv("ENTIRE_TEST_CLAUDE_PROJECT_DIR"); override != "" {
return override, nil
}
homeDir, err := os.UserHomeDir()
if err != nil {
return "", fmt.Errorf("failed to get home directory: %w", err)
}
projectDir := SanitizePathForClaude(repoPath)
return filepath.Join(homeDir, ".claude", "projects", projectDir), nil
}
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// Lines 87-89
func (c *ClaudeCodeAgent) ResolveSessionFile(sessionDir, agentSessionID string) string {
return filepath.Join(sessionDir, agentSessionID+".jsonl")
}
2. Transcript Parsing
File: cmd/entire/cli/transcript/parse.go
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// Lines 15-47
// ParseFromBytes parses transcript content from a byte slice.
// Uses bufio.Reader to handle arbitrarily long lines.
func ParseFromBytes(content []byte) ([]Line, error) {
var lines []Line
reader := bufio.NewReader(bytes.NewReader(content))
for {
lineBytes, err := reader.ReadBytes('\n')
if err != nil && err != io.EOF {
return nil, fmt.Errorf("failed to read transcript: %w", err)
}
// Handle empty line or EOF without content
if len(lineBytes) == 0 {
if err == io.EOF {
break
}
continue
}
var line Line
if err := json.Unmarshal(lineBytes, &line); err == nil {
normalizeLineType(&line)
lines = append(lines, line)
}
if err == io.EOF {
break
}
}
return lines, nil
}
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// Lines 114-143
// SliceFromLine returns the content starting from line number `startLine` (0-indexed).
// This is used to extract only the checkpoint-specific portion of a cumulative transcript.
// For example, if startLine is 2, lines 0 and 1 are skipped and the result starts at line 2.
// Returns empty slice if startLine exceeds the number of lines.
func SliceFromLine(content []byte, startLine int) []byte {
if len(content) == 0 || startLine <= 0 {
return content
}
// Find the byte offset where startLine begins
lineCount := 0
offset := 0
for i, b := range content {
if b == '\n' {
lineCount++
if lineCount == startLine {
offset = i + 1
break
}
}
}
// If we didn't find enough lines, return empty
if lineCount < startLine {
return nil
}
// If offset is beyond content, return empty
if offset >= len(content) {
return nil
}
return content[offset:]
}
File: cmd/entire/cli/transcript/types.go
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// Lines 19-27
// Line represents a single line in a Claude Code or Cursor JSONL transcript.
// Claude Code uses "type" to distinguish user/assistant messages.
// Cursor uses "role" for the same purpose.
type Line struct {
Type string `json:"type"`
Role string `json:"role,omitempty"`
UUID string `json:"uuid"`
Message json.RawMessage `json:"message"`
}
User prompts detected by checking:
line.Type == "user"(normalized fromrolefield iftypeis empty, seenormalizeLineTypeat line 104-108 of parse.go)- Extract content via
ExtractUserContent(line.Message)(lines 149-178 of parse.go)
3. Token Usage & Spawned Agents
File: cmd/entire/cli/agent/claudecode/transcript.go
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// Lines 140-183
// CalculateTokenUsage calculates token usage from a Claude Code transcript.
// This is specific to Claude/Anthropic's API format where each assistant message
// contains a usage object with input_tokens, output_tokens, and cache tokens.
//
// Due to streaming, multiple transcript rows may share the same message.id.
// We deduplicate by taking the row with the highest output_tokens for each message.id.
func CalculateTokenUsage(transcript []TranscriptLine) *agent.TokenUsage {
// Map from message.id to the usage with highest output_tokens
usageByMessageID := make(map[string]messageUsage)
for _, line := range transcript {
if line.Type != envelopeTypeAssistant {
continue
}
var msg messageWithUsage
if err := json.Unmarshal(line.Message, &msg); err != nil {
continue
}
if msg.ID == "" {
continue
}
// Keep the entry with highest output_tokens (final streaming state)
existing, exists := usageByMessageID[msg.ID]
if !exists || msg.Usage.OutputTokens > existing.OutputTokens {
usageByMessageID[msg.ID] = msg.Usage
}
}
// Sum up all unique messages
usage := &agent.TokenUsage{
APICallCount: len(usageByMessageID),
}
for _, u := range usageByMessageID {
usage.InputTokens += u.InputTokens
usage.CacheCreationTokens += u.CacheCreationInputTokens
usage.CacheReadTokens += u.CacheReadInputTokens
usage.OutputTokens += u.OutputTokens
}
return usage
}
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// Lines 185-198
// CalculateTokenUsageFromFile calculates token usage from a Claude Code transcript file.
// If startLine > 0, only considers lines from startLine onwards.
func CalculateTokenUsageFromFile(path string, startLine int) (*agent.TokenUsage, error) {
if path == "" {
return &agent.TokenUsage{}, nil
}
lines, err := transcript.ParseFromFileAtLine(path, startLine)
if err != nil {
return nil, err //nolint:wrapcheck // caller adds context
}
return CalculateTokenUsage(lines), nil
}
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// Lines 200-269
// ExtractSpawnedAgentIDs extracts agent IDs from Task tool results in a transcript.
// When a Task tool completes, the tool_result contains "agentId: <id>" in its content.
// Returns a map of agentID -> toolUseID for all spawned agents.
func ExtractSpawnedAgentIDs(transcript []TranscriptLine) map[string]string {
agentIDs := make(map[string]string)
for _, line := range transcript {
if line.Type != "user" {
continue
}
// Parse as array of content blocks (tool results)
var contentBlocks []struct {
Type string `json:"type"`
ToolUseID string `json:"tool_use_id"`
Content json.RawMessage `json:"content"`
}
var msg struct {
Content json.RawMessage `json:"content"`
}
if err := json.Unmarshal(line.Message, &msg); err != nil {
continue
}
if err := json.Unmarshal(msg.Content, &contentBlocks); err != nil {
continue
}
for _, block := range contentBlocks {
if block.Type != "tool_result" {
continue
}
// Content can be a string or array of text blocks
var textContent string
// Try as array of text blocks first
var textBlocks []struct {
Type string `json:"type"`
Text string `json:"text"`
}
if err := json.Unmarshal(block.Content, &textBlocks); err == nil {
var textContentSb361 strings.Builder
for _, tb := range textBlocks {
if tb.Type == "text" {
textContentSb361.WriteString(tb.Text + "\n")
}
}
textContent += textContentSb361.String()
} else {
// Try as plain string
var str string
if err := json.Unmarshal(block.Content, &str); err == nil {
textContent = str
}
}
// Look for agentId in the text. Drop any ID that isn't path-safe:
// callers build agent-<id>.jsonl from it and read that file, so this
// is the choke point that keeps the path inside subagentsDir,
// independent of extractAgentIDFromText's character handling.
if agentID := extractAgentIDFromText(textContent); agentID != "" && validation.ValidateAgentID(agentID) == nil {
agentIDs[agentID] = block.ToolUseID
}
}
}
return agentIDs
}
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// Lines 383-423
func (c *ClaudeCodeAgent) CalculateTotalTokenUsage(transcriptData []byte, startLine int, subagentsDir string) (*agent.TokenUsage, error) {
if len(transcriptData) == 0 {
return &agent.TokenUsage{}, nil
}
// Slice to the relevant portion and parse
sliced := transcript.SliceFromLine(transcriptData, startLine)
parsed, err := transcript.ParseFromBytes(sliced)
if err != nil {
return nil, fmt.Errorf("failed to parse transcript: %w", err)
}
// Calculate token usage from parsed transcript
mainUsage := CalculateTokenUsage(parsed)
// Extract spawned agent IDs from the same parsed transcript
agentIDs := ExtractSpawnedAgentIDs(parsed)
// Calculate subagent token usage (skip when subagentsDir is empty to avoid reading from cwd)
if len(agentIDs) > 0 && subagentsDir != "" {
subagentUsage := &agent.TokenUsage{}
for agentID := range agentIDs {
agentPath := filepath.Join(subagentsDir, fmt.Sprintf("agent-%s.jsonl", agentID))
agentUsage, err := CalculateTokenUsageFromFile(agentPath, 0)
if err != nil {
// Agent transcript may not exist yet or may have been cleaned up
continue
}
subagentUsage.InputTokens += agentUsage.InputTokens
subagentUsage.CacheCreationTokens += agentUsage.CacheCreationTokens
subagentUsage.CacheReadTokens += agentUsage.CacheReadTokens
subagentUsage.OutputTokens += agentUsage.OutputTokens
subagentUsage.APICallCount += agentUsage.APICallCount
}
if subagentUsage.APICallCount > 0 {
mainUsage.SubagentTokens = subagentUsage
}
}
return mainUsage, nil
}
File: cmd/entire/cli/agent/types/token_usage.go
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// Lines 3-18
// TokenUsage represents aggregated token usage for a checkpoint.
// This is agent-agnostic and can be populated by any agent that tracks token usage.
type TokenUsage struct {
// InputTokens is the number of input tokens (fresh, not from cache)
InputTokens int `json:"input_tokens"`
// CacheCreationTokens is tokens written to cache (billable at cache write rate)
CacheCreationTokens int `json:"cache_creation_tokens"`
// CacheReadTokens is tokens read from cache (discounted rate)
CacheReadTokens int `json:"cache_read_tokens"`
// OutputTokens is the number of output tokens generated
OutputTokens int `json:"output_tokens"`
// APICallCount is the number of API calls made
APICallCount int `json:"api_call_count"`
// SubagentTokens contains token usage from spawned subagents (if any)
SubagentTokens *TokenUsage `json:"subagent_tokens,omitempty"`
}
4. Timestamp & Prompt Extraction
File: cmd/entire/cli/paths/transcript.go
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// Lines 48-67
// ParseTimestampFromJSONL extracts the timestamp from a JSONL line.
// Returns zero time if the line is empty or doesn't contain a valid timestamp.
func ParseTimestampFromJSONL(line string) time.Time {
if line == "" {
return time.Time{}
}
var entry struct {
Timestamp string `json:"timestamp"`
}
if err := json.Unmarshal([]byte(line), &entry); err != nil {
return time.Time{}
}
t, err := time.Parse(time.RFC3339, entry.Timestamp)
if err != nil {
return time.Time{}
}
return t
}
Prompt extraction in strategy code — File: cmd/entire/cli/strategy/manual_commit_condensation.go
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// Lines 1008-1088 (excerpt showing user prompt extraction)
// extractUserPrompts extracts all user prompts from transcript content.
// Returns prompts with IDE context tags stripped (e.g., <ide_opened_file>).
func extractUserPrompts(agentType types.AgentType, content string) []string {
// ... handles multiple agent types ...
// For Claude Code and other JSONL-based agents:
return extractUserPromptsFromLines(strings.Split(content, "\n"))
}
// extractUserPromptsFromLines extracts user prompts from JSONL transcript lines.
// IDE-injected context tags (like <ide_opened_file>) are stripped from the results.
func extractUserPromptsFromLines(lines []string) []string {
var prompts []string
// ... uses transcript.Line parsing with Type=="user" check ...
}
5. Redaction Pipeline
File: redact/redact.go
Redaction entry point for JSONL transcripts (lines 503-515):
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// Lines 503-515
// JSONLBytes redacts secrets in JSONL-formatted byte content and returns
// the result as RedactedBytes, certifying the output has been through redaction.
func JSONLBytes(b []byte) (RedactedBytes, error) {
s := string(b)
redacted, err := JSONLContent(s)
if err != nil {
return RedactedBytes{}, err
}
if redacted == s {
return RedactedBytes{data: b}, nil
}
return RedactedBytes{data: []byte(redacted)}, nil
}
File: cmd/entire/cli/strategy/manual_commit_condensation.go
Redaction is called at lines 382 within redactSessionTranscript:
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// Lines 370-388
// redactSessionTranscript redacts the transcript once for use by both the compact
// package and the checkpoint stores. Returns the redacted bytes and the duration
// of the redaction operation for perf logging.
func redactSessionTranscript(ctx context.Context, transcript []byte) (redact.RedactedBytes, time.Duration, error) {
start := time.Now()
_, span := perf.Start(ctx, "redact_transcript")
defer span.End()
if len(transcript) == 0 {
return redact.RedactedBytes{}, time.Since(start), nil
}
redacted, err := redactSessionJSONLBytes(ctx, transcript)
if err != nil {
span.RecordError(err)
return redact.RedactedBytes{}, time.Since(start), fmt.Errorf("failed to redact transcript secrets: %w", err)
}
return redacted, time.Since(start), nil
}
The module-level var redactSessionJSONLBytes (line 117):
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var redactSessionJSONLBytes = func(_ context.Context, b []byte) (redact.RedactedBytes, error) {
return redact.JSONLBytes(b)
}
6. Compact Transcript Builder
File: cmd/entire/cli/transcript/compact/compact.go
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// Lines 71-120
// Compact converts a full.jsonl transcript into the condensed transcript.jsonl format.
// The input must be pre-redacted (via redact.JSONLBytes or
// redact.AlreadyRedacted for trusted sources).
//
// The output format puts version, agent, and cli_version on every line,
// merges streaming assistant fragments with the same message ID, and inlines
// tool results into the preceding assistant's tool_use blocks:
//
// {"v":1,"agent":"claude-code","cli_version":"0.42.0","type":"user","ts":"...","content":"..."}
// {"v":1,"agent":"claude-code","cli_version":"0.42.0","type":"assistant","ts":"...","id":"msg_xxx","content":[{"type":"text","text":"..."},{"type":"tool_use","id":"...","name":"...","input":{...},"result":{"output":"...","status":"..."}}]}
func Compact(redacted redact.RedactedBytes, opts MetadataFields) ([]byte, error) {
content := redacted.Bytes()
// Formats that need detection on raw content before line truncation:
// - Single-object formats (OpenCode, Gemini): SliceFromLine would cut
// a JSON object mid-value. They handle StartLine as a message-index offset.
// - Codex: session_meta header is only on the first line. Codex handles
// StartLine as a response_item index offset.
if isOpenCodeFormat(content) {
return compactOpenCode(content, opts)
}
if isGeminiFormat(content) {
return compactGemini(content, opts)
}
// pi: detect on the raw header line. compactPi handles StartLine itself.
if isPiFormat(content) {
return compactPi(content, opts)
}
if isCodexFormat(content) {
return compactCodex(content, opts)
}
truncated := transcript.SliceFromLine(content, opts.StartLine)
if truncated == nil {
truncated = []byte{}
}
if isCopilotFormat(truncated) {
return compactCopilot(truncated, opts)
}
if isDroidFormat(truncated) {
return compactDroid(truncated, opts)
}
return compactJSONL(truncated, opts)
}
7. Subagents Directory Location
File: cmd/entire/cli/strategy/manual_commit_hooks.go
Line 1915 shows how subagents dir is constructed for a Claude Code session:
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// Line 1915
subagentsDir := filepath.Join(filepath.Dir(state.TranscriptPath), state.SessionID, "subagents")
Context (lines 1910-1946):
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var modifiedFiles []string
// For Claude Code, use ExtractAllModifiedFiles which parses the main transcript
// AND subagent transcripts in a single pass, avoiding redundant parsing.
if state.AgentType == agent.AgentTypeClaudeCode {
subagentsDir := filepath.Join(filepath.Dir(state.TranscriptPath), state.SessionID, "subagents")
transcriptData, readErr := os.ReadFile(state.TranscriptPath)
if readErr != nil {
logging.Debug(logCtx, "extractModifiedFilesFromLiveTranscript: failed to read transcript",
slog.String("session_id", state.SessionID),
slog.String("error", readErr.Error()),
)
} else {
// TODO: fix when we refactor this area.
// rather than instantiating claude specifically, we should iterate agents.
c := &claudecode.ClaudeCodeAgent{}
allFiles, extractErr := c.ExtractAllModifiedFiles(transcriptData, offset, subagentsDir)
if extractErr != nil {
logging.Debug(logCtx, "extractModifiedFilesFromLiveTranscript: extraction failed",
slog.String("session_id", state.SessionID),
slog.String("error", extractErr.Error()),
)
} else {
modifiedFiles = allFiles
}
}
}
8. Session Data Extraction Container
File: cmd/entire/cli/strategy/manual_commit_types.go
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// Lines 62-69
type ExtractedSessionData struct {
Transcript []byte // Full transcript content for the session
FullTranscriptLines int // Total line count in full transcript
Prompts []string // User prompts from the current checkpoint portion
FilesTouched []string
TokenUsage *agent.TokenUsage // Token usage calculated from transcript (since CheckpointTranscriptStart)
SkillEvents []agent.SkillEvent // Skill events detected from transcript data
}
---
3w ago
VERBATIM CODE EXCERPTS FOR IMPLEMENTATION PLAN
1. Enable Interactive Flow
cmd/entire/cli/setup.go:1054-1174 — runEnableInteractive signature and telemetry prompt section:
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// cmd/entire/cli/setup.go:1054-1174
func runEnableInteractive(ctx context.Context, w io.Writer, agents []agent.Agent, opts EnableOptions) error {
// Uninstall hooks for agents that were previously active but are no longer selected
if err := uninstallDeselectedAgentHooks(ctx, w, agents); err != nil {
return fmt.Errorf("failed to clean up deselected agents: %w", err)
}
// Setup agent hooks for all selected agents
for _, ag := range agents {
if _, err := setupAgentHooks(ctx, w, ag, opts.LocalDev, opts.ForceHooks); err != nil {
return fmt.Errorf("failed to setup %s hooks: %w", ag.Type(), err)
}
}
// Setup .entire directory
if _, err := setupEntireDirectory(ctx); err != nil {
return fmt.Errorf("failed to setup .entire directory: %w", err)
}
// Load existing settings to preserve other options (like strategy_options.push)
settings, err := LoadEntireSettings(ctx)
if err != nil {
// If we can't load, start with defaults
settings = &EntireSettings{}
}
// Update the specific fields
settings.Enabled = true
if opts.LocalDev {
settings.LocalDev = true
}
if opts.AbsoluteGitHookPath {
settings.AbsoluteGitHookPath = true
}
// Auto-enable external_agents if any selected agent is external.
for _, ag := range agents {
if external.IsExternal(ag) {
settings.ExternalAgents = true
break
}
}
opts.applyStrategyOptions(settings)
// Determine which settings file to write to
// First run always creates settings.json (no prompt)
entireDirAbs, err := paths.AbsPath(ctx, paths.EntireDir)
if err != nil {
entireDirAbs = paths.EntireDir // Fallback to relative
}
shouldUseLocal, showNotification := determineSettingsTarget(entireDirAbs, opts.UseLocalSettings, opts.UseProjectSettings)
if showNotification {
fmt.Fprintln(w, "Info: Project settings exist. Saving to settings.local.json instead.")
fmt.Fprintln(w, " Use --project to update the project settings file.")
}
// Save settings to the appropriate file.
targetFile := EntireSettingsFile
if shouldUseLocal {
targetFile = EntireSettingsLocalFile
}
saveSettings := func() error {
return saveSettingsToTarget(ctx, settings, targetFile)
}
if err := saveSettings(); err != nil {
return fmt.Errorf("failed to save settings: %w", err)
}
// Use settings values (merged from existing config + flags) for hook installation
// This ensures re-running `entire enable` without flags preserves existing settings
if _, err := strategy.InstallGitHook(ctx, true, settings.LocalDev, settings.AbsoluteGitHookPath); err != nil {
return fmt.Errorf("failed to install git hooks: %w", err)
}
strategy.CheckAndWarnHookManagers(ctx, w, settings.LocalDev, settings.AbsoluteGitHookPath)
fmt.Fprintln(w, " ✓ Installed hooks")
configDisplay := configDisplayProject
if shouldUseLocal {
configDisplay = configDisplayLocal
}
fmt.Fprintln(w, " ✓ Configured project")
fmt.Fprintf(w, " %s\n", configDisplay)
var vercelPromptFn func() (bool, error)
if opts.Yes {
vercelPromptFn = func() (bool, error) { return true, nil }
}
if _, err := maybePromptVercelDeploymentDisable(ctx, w, targetFile, vercelPromptFn); err != nil {
return err
}
// Ask about telemetry consent (only if not already asked).
// --yes skips the interactive prompt but still respects --telemetry=false
// and ENTIRE_TELEMETRY_OPTOUT — it only auto-answers the interactive question.
if opts.Yes {
if !opts.Telemetry || os.Getenv("ENTIRE_TELEMETRY_OPTOUT") != "" {
f := false
settings.Telemetry = &f
} else if settings.Telemetry == nil {
t := true
settings.Telemetry = &t
}
} else if err := promptTelemetryConsent(settings, opts.Telemetry); err != nil {
return fmt.Errorf("telemetry consent: %w", err)
}
// Save again to persist telemetry choice
if err := saveSettings(); err != nil {
return fmt.Errorf("failed to save settings: %w", err)
}
if err := strategy.EnsureSetup(ctx); err != nil {
return fmt.Errorf("failed to setup strategy: %w", err)
}
if opts.SuppressDoneMessage {
// Bootstrap finalize will print its own completion summary after
// making the initial commit and pushing.
return nil
}
fmt.Fprintln(w, "\nReady.")
// Note about empty repos at the end, after setup is complete
if repo, err := strategy.OpenRepository(ctx); err == nil {
defer repo.Close()
if strategy.IsEmptyRepository(repo) {
fmt.Fprintln(w)
fmt.Fprintln(w, "Note: Session checkpoints require at least one commit. To get started,")
fmt.Fprintln(w, "commit the configuration files (e.g. .entire/, .claude/).")
}
}
return nil
}
cmd/entire/cli/setup.go:1868-1909 — promptTelemetryConsent pattern:
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// cmd/entire/cli/setup.go:1868-1909
func promptTelemetryConsent(settings *EntireSettings, telemetryFlag bool) error {
// Handle --telemetry=false flag first (always overrides existing setting)
if !telemetryFlag {
f := false
settings.Telemetry = &f
return nil
}
// Skip if already asked
if settings.Telemetry != nil {
return nil
}
// Skip if env var disables telemetry (record as disabled)
if os.Getenv("ENTIRE_TELEMETRY_OPTOUT") != "" {
f := false
settings.Telemetry = &f
return nil
}
if err := form.Run(); err != nil {
return fmt.Errorf("telemetry prompt: %w", err)
}
settings.Telemetry = &consent
return nil
}
cmd/entire/cli/setup.go:57-73 — EnableOptions struct with Yes field:
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// cmd/entire/cli/setup.go:57-73
type EnableOptions struct {
LocalDev bool
UseLocalSettings bool
UseProjectSettings bool
ForceHooks bool
SkipPushSessions bool
CheckpointRemote string
Telemetry bool
AbsoluteGitHookPath bool
// SuppressDoneMessage tells `runEnableInteractive` to skip its final
// "Ready." line and the "commit the configuration files" hint. Set
// when the caller is running the bootstrap flow, which takes over
// presentation of the final state (commit, push, done).
SuppressDoneMessage bool
Yes bool
}
2. Form/Interactive Helpers
cmd/entire/cli/utils.go:24-28 — NewAccessibleForm signature:
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// cmd/entire/cli/utils.go:24-28
// NewAccessibleForm creates a new huh form with Entire's standard theme,
// switching to accessibility mode when ACCESSIBLE is set.
func NewAccessibleForm(groups ...*huh.Group) *huh.Form {
return uiform.New(groups...)
}
cmd/entire/cli/interactive/interactive.go:21-59 — CanPromptInteractively signature and full function:
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// cmd/entire/cli/interactive/interactive.go:21-59
// CanPromptInteractively reports whether interactive confirmation prompts
// (huh forms, yes/no questions, etc.) can be shown. Returns false in CI,
// agent subprocesses that inherit a TTY but can't respond to prompts,
// and other environments without a controlling TTY.
//
// Precedence (first match wins):
// 1. EnvTestTTY=1 forces interactive ON; any other non-empty value forces OFF.
// 2. testing.Testing() — `go test` runs default to OFF so in-process tests
// don't hang on developer terminals that happen to have a real /dev/tty.
// Subprocess tests must spawn via execx.NonInteractive (or set EnvTestTTY).
// 3. Agent sentinels — vendor-set by agent subprocesses.
// 4. CI=<non-empty-non-false> — de-facto CI convention.
// 5. /dev/tty probe.
func CanPromptInteractively() bool {
if v := os.Getenv(EnvTestTTY); v != "" {
return v == "1"
}
if testing.Testing() {
return false
}
if isAgentSubprocessEnv() {
return false
}
// CI=<non-empty> is the de-facto CI-provider convention (GitHub Actions,
// CircleCI, GitLab, Travis, Buildkite). Self-hosted runners expose /dev/tty,
// so the probe below isn't enough — an interactive prompt on CI hangs.
// CI=false is the `is-ci` escape hatch for developers who need to override
// an inherited value.
if v := os.Getenv("CI"); v != "" && v != "false" {
return false
}
tty, err := os.OpenFile("/dev/tty", os.O_RDWR, 0)
if err != nil {
return false
}
_ = tty.Close()
return true
}
3. Hidden/Labs Command Registration
cmd/entire/cli/labs.go:70-90 — newLabsCmd constructor:
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// cmd/entire/cli/labs.go:70-90
func newLabsCmd() *cobra.Command {
cmd := &cobra.Command{
Use: "labs",
Short: "Explore experimental Entire workflows",
Long: labsOverview(),
Args: func(cmd *cobra.Command, args []string) error {
if len(args) == 0 {
return nil
}
err := fmt.Errorf("unknown labs topic %q", args[0])
fmt.Fprintf(cmd.ErrOrStderr(),
"%v\n\nRun `entire labs` to see available experimental commands, or run `entire review --help` for command-specific help.\n",
err)
return NewSilentError(err)
},
Run: func(cmd *cobra.Command, _ []string) {
fmt.Fprint(cmd.OutOrStdout(), labsOverview())
},
}
return cmd
}
cmd/entire/cli/root.go:84-91 — Command registration (labs added to root):
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// cmd/entire/cli/root.go:84-91
// Noun groups (canonical homes for subcommands).
cmd.AddCommand(newSessionsCmd()) // 'session' (with 'sessions' as Cobra alias)
cmd.AddCommand(newCheckpointGroupCmd()) // 'checkpoint' / 'cp' / 'checkpoints'
cmd.AddCommand(newTokensGroupCmd()) // 'tokens'
cmd.AddCommand(newAgentGroupCmd()) // 'agent'
cmd.AddCommand(newAuthCmd()) // 'auth'
cmd.AddCommand(newDoctorCmd()) // 'doctor' (group: trace/logs/bundle)
cmd.AddCommand(newLabsCmd()) // 'labs' (experimental workflow discovery)
cmd.AddCommand(newPluginGroupCmd()) // 'plugin' (managed install/list/remove)
cmd/entire/cli/tokens_profile.go:52-72 — newTokensGroupCmd (parent group) that adds profile subcommand:
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// cmd/entire/cli/tokens_profile.go:52-72
func newTokensGroupCmd() *cobra.Command {
cmd := &cobra.Command{
Use: "tokens",
Short: "Analyze token usage across sessions and checkpoints",
Hidden: true,
Long: `Analyze token usage across sessions and checkpoints.
Commands:
profile Aggregate token usage across committed checkpoints
Examples:
entire tokens profile
entire tokens profile --json`,
RunE: func(cmd *cobra.Command, _ []string) error {
return cmd.Help()
},
}
cmd.AddCommand(newTokensProfileCmd())
return cmd
}
cmd/entire/cli/tokens_profile.go:74-105 — newTokensProfileCmd (hidden subcommand):
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// cmd/entire/cli/tokens_profile.go:74-105
func newTokensProfileCmd() *cobra.Command {
var jsonFlag bool
var limitFlag int
var allFlag bool
cmd := &cobra.Command{
Use: "profile",
Short: "Aggregate token usage and recommendations across checkpoint history",
Long: `Aggregate token usage and recommendations across committed checkpoint history.
The profile reads committed checkpoint metadata only. It does not inspect
transcripts or source files, so it is deterministic and avoids adding token
cost while diagnosing token usage. By default it scans the latest 50 committed
checkpoints; use --limit or --all to change the scope.`,
Args: cobra.NoArgs,
RunE: func(cmd *cobra.Command, _ []string) error {
limit := limitFlag
if allFlag {
limit = 0
} else if limit <= 0 {
return errors.New("--limit must be positive unless --all is used")
}
return runTokensProfile(cmd.Context(), cmd, jsonFlag, limit)
},
}
cmd.Flags().BoolVar(&jsonFlag, "json", false, "Output as JSON")
cmd.Flags().IntVar(&limitFlag, "limit", 50, "Maximum committed checkpoints to analyze")
cmd.Flags().BoolVar(&allFlag, "all", false, "Analyze all committed checkpoints")
cmd.MarkFlagsMutuallyExclusive("limit", "all")
return cmd
}
cmd/entire/cli/aliascmd.go:5-12 — hideAsAlias helper for hidden shortcuts:
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// cmd/entire/cli/aliascmd.go:5-12
// hideAsAlias marks cmd as a hidden top-level shortcut that prints a one-line
// hint pointing at the canonical command. Cobra's Deprecated field renders the
// hint to stderr on every invocation while keeping the command functional.
func hideAsAlias(cmd *cobra.Command, canonical string) *cobra.Command {
cmd.Hidden = true
cmd.Deprecated = "use '" + canonical + "' instead"
return cmd
}
4. Checkpoint Read Commands
cmd/entire/cli/checkpoint_group.go:54-75 — newCheckpointListCmd (calls runExplainBranchWithFilter):
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// cmd/entire/cli/checkpoint_group.go:54-75
// newCheckpointListCmd wraps the existing branch-default list view.
func newCheckpointListCmd() *cobra.Command {
var sessionFlag string
var noPagerFlag bool
cmd := &cobra.Command{
Use: "list",
Short: "List checkpoints on the current branch",
Long: `List checkpoints on the current branch.
Optionally filter by session ID with --session.`,
RunE: func(cmd *cobra.Command, _ []string) error {
if checkDisabledGuard(cmd.Context(), cmd.OutOrStdout()) {
return nil
}
return runExplainBranchWithFilter(cmd.Context(), cmd.OutOrStdout(), noPagerFlag, sessionFlag)
},
}
cmd.Flags().StringVar(&sessionFlag, "session", "", "Filter checkpoints by session ID (or prefix)")
cmd.Flags().BoolVar(&noPagerFlag, "no-pager", false, "Disable pager output")
return cmd
}
cmd/entire/cli/explain.go:2038-2068 — getBranchCheckpoints that calls store.List(ctx):
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// cmd/entire/cli/explain.go:2038-2068
func getBranchCheckpoints(ctx context.Context, repo *git.Repository, limit int) ([]strategy.RewindPoint, error) {
// Warn (once per process) if metadata branches are disconnected
strategy.WarnIfMetadataDisconnected()
stores, err := checkpoint.Open(ctx, repo, checkpoint.OpenOptions{})
if err != nil {
return nil, fmt.Errorf("open checkpoint store: %w", err)
}
store := stores.Persistent
// Get all committed checkpoints for lookup.
committedInfos, err := store.List(ctx)
if err != nil {
committedInfos = nil // Continue without committed checkpoints
}
// Build map of checkpoint ID -> committed info
committedByID := make(map[id.CheckpointID]checkpoint.CheckpointInfo)
for _, info := range committedInfos {
if !info.CheckpointID.IsEmpty() {
committedByID[info.CheckpointID] = info
}
}
head, err := repo.Head()
if err != nil {
// Unborn HEAD (no commits yet) - return empty list instead of erroring
if errors.Is(err, plumbing.ErrReferenceNotFound) {
return []strategy.RewindPoint{}, nil
}
return nil, fmt.Errorf("failed to get HEAD: %w", err)
}
cmd/entire/cli/tokens_profile.go:107-133 — runTokensProfile that calls store.List(ctx):
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// cmd/entire/cli/tokens_profile.go:107-133
func runTokensProfile(ctx context.Context, cmd *cobra.Command, jsonOutput bool, limit int) error {
repo, err := openRepository(ctx)
if err != nil {
cmd.SilenceUsage = true
fmt.Fprintln(cmd.ErrOrStderr(), "Not a git repository.")
return NewSilentError(err)
}
defer repo.Close()
store := checkpoint.NewGitStore(repo, checkpoint.ResolveRefs(ctx))
store.SetBlobFetcher(FetchBlobsByHash)
infos, err := store.List(ctx)
if err != nil {
return fmt.Errorf("failed to list checkpoints: %w", err)
}
report, err := buildTokensProfileReport(ctx, store, infos, limit)
if err != nil {
return err
}
if jsonOutput {
return writeTokensProfileJSON(cmd.OutOrStdout(), report)
}
writeTokensProfileText(cmd.OutOrStdout(), report)
return nil
}
cmd/entire/cli/search_cmd.go:34-200 — newSearchCmd (search reads from API, not local checkpoint store directly, but registered as hidden):
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// cmd/entire/cli/search_cmd.go:34-200
cmd := &cobra.Command{
Use: "search [query]",
Short: "Search checkpoints, commits, and sessions using semantic and keyword matching",
Long: `Search checkpoints, commits, and sessions using hybrid search (semantic + keyword),
powered by the Entire search service.
Requires authentication via 'entire login' (GitHub device flow).
By default, results are scoped to the current repository. Use --all-repos to
search across all accessible repos.
Run without arguments to open an interactive search. Results are
displayed in an interactive table. Use --json for machine-readable output.
CLI queries also support inline filters like author:<name>, date:<week|month>,
branch:<name>, repo:<owner/name>, and repo:* to search all accessible repos.`,
Args: cobra.ArbitraryArgs,
Hidden: true,
RunE: func(cmd *cobra.Command, args []string) error {
// ... rest of implementation
},
}
cmd/entire/cli/strategy/cleanup.go:314-332 — cpStores.Persistent.List(ctx) call (unsupported consumer that must filter imported checkpoints):
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// cmd/entire/cli/strategy/cleanup.go:314-332
// Get all committed checkpoints from the configured read ref to find which sessions have checkpoints
cpStores, err := checkpoint.Open(ctx, repo, checkpoint.OpenOptions{})
if err != nil {
return nil, fmt.Errorf("open checkpoint store: %w", err)
}
sessionsWithCheckpoints := make(map[string]bool)
checkpoints, listErr := cpStores.Persistent.List(ctx)
if listErr == nil {
for _, cp := range checkpoints {
// cp.SessionID is the most-recent session in a multi-session checkpoint;
// cp.SessionIDs lists every session that contributed. Track all of them so
// archived sessions of condensed checkpoints aren't flagged as orphaned.
sessionsWithCheckpoints[cp.SessionID] = true
for _, sid := range cp.SessionIDs {
sessionsWithCheckpoints[sid] = true
}
}
}
```</result>
<usage><subagent_tokens>70244</subagent_tokens><tool_uses>30</tool_uses><duration_ms>107934</duration_ms></usage>
</task-notification>
3w ago·6m·1 call
Plan complete and saved to docs/superpowers/plans/2026-06-25-import-claude-code-transcripts.md.
It's 12 tasks, each TDD with an independently testable deliverable:
entire/imports/v1ref topology (never inPush)Provenance+Kind="imported"+Importedflag in the metadata contract- Wire provenance/flag through the writer + surface on
List - Deterministic per-turn checkpoint IDs (idempotency)
- Transcript discovery (repo→
~/.claude/projects, one-month lookback,--session) - Per-turn split with token usage bounded to the next turn + subagent rollup
- Importer orchestrator (redact → write → idempotent skip → dry-run)
- Read union +
(imported)label forlist/explain/tokens; v1-only paths (cleanup) stay clean - Rewind refusal for imported checkpoints
- Hidden
entire import claude-codecommand under labs - Enable-time opt-in prompt ("from the past month", default No, skips non-interactive/
--yes) - End-to-end integration test + full
mise run check
Self-review passed; every spec requirement maps to a task. Three inline notes flag local APIs the implementer must read one file to confirm (the id.CheckpointID hex constructor, transcript.ExtractUserContent's exact signature, the rewind entrypoint name) rather than guessing them.
I did not commit the spec or plan — say the word and I'll commit both.
Two execution options:
1. Subagent-Driven (recommended) — I dispatch a fresh subagent per task, review between tasks, fast iteration.
2. Inline Execution — I execute tasks in this session via executing-plans, batched with checkpoints for your review.
Which approach?
2
3w ago·15.4s·1 call
Base directory for this skill: /Users/ninawork/.claude/plugins/cache/claude-plugins-official/superpowers/6.0.3/skills/executing-plans
Executing Plans
Overview
Load plan, review critically, execute all tasks, report when complete.
Announce at start: "I'm using the executing-plans skill to implement this plan."
Note: Tell your human partner that Superpowers works much better with access to subagents. The quality of its work will be significantly higher if run on a platform with subagent support (Claude Code, Codex CLI, Codex App, Copilot CLI, and Gemini CLI all qualify; see the per-platform tool refs in ../using-superpowers/references/). If subagents are available, use superpowers:subagent-driven-development instead of this skill.
The Process
Step 1: Load and Review Plan
- Read plan file
- Review critically - identify any questions or concerns about the plan
- If concerns: Raise them with your human partner before starting
- If no concerns: Create todos for the plan items and proceed
Step 2: Execute Tasks
For each task:
- Mark as in_progress
- Follow each step exactly (plan has bite-sized steps)
- Run verifications as specified
- Mark as completed
Step 3: Complete Development
After all tasks complete and verified:
- Announce: "I'm using the finishing-a-development-branch skill to complete this work."
- REQUIRED SUB-SKILL: Use superpowers:finishing-a-development-branch
- Follow that skill to verify tests, present options, execute choice
When to Stop and Ask for Help
STOP executing immediately when:
- Hit a blocker (missing dependency, test fails, instruction unclear)
- Plan has critical gaps preventing starting
- You don't understand an instruction
- Verification fails repeatedly
Ask for clarification rather than guessing.
When to Revisit Earlier Steps
Return to Review (Step 1) when:
- Partner updates the plan based on your feedback
- Fundamental approach needs rethinking
Don't force through blockers - stop and ask.
Remember
- Review plan critically first
- Follow plan steps exactly
- Don't skip verifications
- Reference skills when plan says to
- Stop when blocked, don't guess
- Never start implementation on main/master branch without explicit user consent
Integration
Required workflow skills:
- superpowers:using-git-worktrees - Ensures isolated workspace (creates one or verifies existing)
- superpowers:writing-plans - Creates the plan this skill executes
- superpowers:finishing-a-development-branch - Complete development after all tasks
3w ago·52m·210 calls
CI suite (unit + integration + e2e canary) is running in the background. I'll continue once it reports back.
3w ago·39.0s·4 calls
All 12 tasks are complete and the full CI suite (unit + integration + e2e canary) passes. Let me complete the development branch properly.
d4715a1test(import): end-to-end integration coverage; lint fixups\ \ Co-Authored-By: Claude Opus 4.8 noreply@anthropic.com\ Entire-Checkpoint: 412f636a521e+100/-22
Base directory for this skill: /Users/ninawork/.claude/plugins/cache/claude-plugins-official/superpowers/6.0.3/skills/finishing-a-development-branch
Finishing a Development Branch
Overview
Guide completion of development work by presenting clear options and handling chosen workflow.
Core principle: Verify tests → Detect environment → Present options → Execute choice → Clean up.
Announce at start: "I'm using the finishing-a-development-branch skill to complete this work."
The Process
Step 1: Verify Tests
Before presenting options, verify tests pass:
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# Run project's test suite
npm test / cargo test / pytest / go test ./...
If tests fail:
Tests failing (<N> failures). Must fix before completing:
[Show failures]
Cannot proceed with merge/PR until tests pass.
Stop. Don't proceed to Step 2.
If tests pass: Continue to Step 2.
Step 2: Detect Environment
Determine workspace state before presenting options:
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GIT_DIR=$(cd "$(git rev-parse --git-dir)" 2>/dev/null && pwd -P)
GIT_COMMON=$(cd "$(git rev-parse --git-common-dir)" 2>/dev/null && pwd -P)
This determines which menu to show and how cleanup works:
| State | Menu | Cleanup |
|---|---|---|
GIT_DIR == GIT_COMMON (normal repo) |
Standard 4 options | No worktree to clean up |
GIT_DIR != GIT_COMMON, named branch |
Standard 4 options | Provenance-based (see Step 6) |
GIT_DIR != GIT_COMMON, detached HEAD |
Reduced 3 options (no merge) | No cleanup (externally managed) |
Step 3: Determine Base Branch
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# Try common base branches
git merge-base HEAD main 2>/dev/null || git merge-base HEAD master 2>/dev/null
Or ask: "This branch split from main - is that correct?"
Step 4: Present Options
Normal repo and named-branch worktree — present exactly these 4 options:
Implementation complete. What would you like to do?
1. Merge back to <base-branch> locally
2. Push and create a Pull Request
3. Keep the branch as-is (I'll handle it later)
4. Discard this work
Which option?
Detached HEAD — present exactly these 3 options:
Implementation complete. You're on a detached HEAD (externally managed workspace).
1. Push as new branch and create a Pull Request
2. Keep as-is (I'll handle it later)
3. Discard this work
Which option?
Don't add explanation - keep options concise.
Step 5: Execute Choice
Option 1: Merge Locally
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# Get main repo root for CWD safety
MAIN_ROOT=$(git -C "$(git rev-parse --git-common-dir)/.." rev-parse --show-toplevel)
cd "$MAIN_ROOT"
# Merge first — verify success before removing anything
git checkout <base-branch>
git pull
git merge <feature-branch>
# Verify tests on merged result
<test command>
# Only after merge succeeds: cleanup worktree (Step 6), then delete branch
Then: Cleanup worktree (Step 6), then delete branch:
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git branch -d <feature-branch>
Option 2: Push and Create PR
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# Push branch
git push -u origin <feature-branch>
Do NOT clean up worktree — user needs it alive to iterate on PR feedback.
Option 3: Keep As-Is
Report: "Keeping branch
Don't cleanup worktree.
Option 4: Discard
Confirm first:
This will permanently delete:
- Branch <name>
- All commits: <commit-list>
- Worktree at <path>
Type 'discard' to confirm.
Wait for exact confirmation.
If confirmed:
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MAIN_ROOT=$(git -C "$(git rev-parse --git-common-dir)/.." rev-parse --show-toplevel)
cd "$MAIN_ROOT"
Then: Cleanup worktree (Step 6), then force-delete branch:
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git branch -D <feature-branch>
Step 6: Cleanup Workspace
Only runs for Options 1 and 4. Options 2 and 3 always preserve the worktree.
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GIT_DIR=$(cd "$(git rev-parse --git-dir)" 2>/dev/null && pwd -P)
GIT_COMMON=$(cd "$(git rev-parse --git-common-dir)" 2>/dev/null && pwd -P)
WORKTREE_PATH=$(git rev-parse --show-toplevel)
If GIT_DIR == GIT_COMMON: Normal repo, no worktree to clean up. Done.
If worktree path is under .worktrees/ or worktrees/: Superpowers created this worktree — we own cleanup.
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MAIN_ROOT=$(git -C "$(git rev-parse --git-common-dir)/.." rev-parse --show-toplevel)
cd "$MAIN_ROOT"
git worktree remove "$WORKTREE_PATH"
git worktree prune # Self-healing: clean up any stale registrations
Otherwise: The host environment (harness) owns this workspace. Do NOT remove it. If your platform provides a workspace-exit tool, use it. Otherwise, leave the workspace in place.
Quick Reference
| Option | Merge | Push | Keep Worktree | Cleanup Branch |
|---|---|---|---|---|
| 1. Merge locally | yes | - | - | yes |
| 2. Create PR | - | yes | yes | - |
| 3. Keep as-is | - | - | yes | - |
| 4. Discard | - | - | - | yes (force) |
Common Mistakes
Skipping test verification
- Problem: Merge broken code, create failing PR
- Fix: Always verify tests before offering options
Open-ended questions
- Problem: "What should I do next?" is ambiguous
- Fix: Present exactly 4 structured options (or 3 for detached HEAD)
Cleaning up worktree for Option 2
- Problem: Remove worktree user needs for PR iteration
- Fix: Only cleanup for Options 1 and 4
Deleting branch before removing worktree
- Problem:
git branch -dfails because worktree still references the branch - Fix: Merge first, remove worktree, then delete branch
Running git worktree remove from inside the worktree
- Problem: Command fails silently when CWD is inside the worktree being removed
- Fix: Always
cdto main repo root beforegit worktree remove
Cleaning up harness-owned worktrees
- Problem: Removing a worktree the harness created causes phantom state
- Fix: Only clean up worktrees under
.worktrees/orworktrees/
No confirmation for discard
- Problem: Accidentally delete work
- Fix: Require typed "discard" confirmation
Red Flags
Never:
- Proceed with failing tests
- Merge without verifying tests on result
- Delete work without confirmation
- Force-push without explicit request
- Remove a worktree before confirming merge success
- Clean up worktrees you didn't create (provenance check)
- Run
git worktree removefrom inside the worktree
Always:
- Verify tests before offering options
- Detect environment before presenting menu
- Present exactly 4 options (or 3 for detached HEAD)
- Get typed confirmation for Option 4
- Clean up worktree for Options 1 & 4 only
cdto main repo root before worktree removal- Run
git worktree pruneafter removal
3w ago·15m·28 calls
Done. The branch import-existing-claude-projects is kept as-is with all commits in place — nothing pushed, nothing merged.
Summary
13 commits on the branch: 12 implementation tasks + 1 simplification.
What landed:
entire import claude-code [--path] [--dry-run] [--session]— hidden, discoverable viaentire labs. Fixed one-month lookback, idempotent, dry-run.- Enable-time opt-in prompt ("Found N … from the past month", default No, skipped when non-interactive/
--yes). - Imported turns become read-only, commit-less checkpoints on the local-only
entire/imports/v1ref (never inPush), one per user-prompt turn, with per-turn token usage,Kind:"imported", and provenance. list/explain/tokensunion and label imports ([imported]); v1-only consumers (cleanup, lifecycle) never see them.rewindrefuses imported checkpoints with a clear read-only message.
Simplification pass: added checkpoint.OpenImports to collapse the repeated ImportsRefs() + Open(...) boilerplate across 5 call sites, removed the ptrRefs helper and a dead nil-check.
Verification state:
mise run lint→ 0 issues- Import unit tests + integration test (
TestImportClaudeCode_EndToEnd) green after the refactor - Full
mise run test:ci(unit + integration + e2e canary) was green before the simplification; I re-ran lint + the import-touching packages + the integration test after it, but did not re-run the entiretest:cisince you said you want to run tests yourself.
Spec and plan docs are written to docs/superpowers/specs/2026-06-25-import-claude-code-transcripts-design.md and docs/superpowers/plans/2026-06-25-import-claude-code-transcripts.md (left uncommitted, per your commit-only-when-asked rule).
Tests are yours to run — when you're ready, mise run test:ci is the full gate.
what happens if someone runs entire enable, disables entire, makes a number of claude sessions, then reruns enable?
3w ago·3m·7 calls
Recorded. To close the loop on your question:
What happens: the re-enable takes the lightweight runEnable() path (since IsSetUpAny is true whether or not Entire is enabled), so the import prompt doesn't fire — the sessions you made while disabled aren't auto-offered. They're recoverable any time via entire import claude-code, which idempotently imports the new turns within the one-month window.
Code is left as-is per your call, and I've saved the gap so it'll surface when you open the PR after local testing — ready to drop into the PR description as a known limitation.
➜ test-new-claude git:(hooks-slow-push-db-mirror) ✗ entire enable Entire is already enabled. Agents: Claude Code
To add more agents, run entire agent add <name>.
➜ test-new-claude git:(hooks-slow-push-db-mirror) ✗ pwd
/Users/ninawork/entire/devenv/test-new-claude
➜ test-new-claude git:(hooks-slow-push-db-mirror) ✗
3w ago·51.3s
That output is the already-enabled short-circuit (setup.go:881–887): when the repo is already set up and enabled, enable just prints status and returns — it never reaches runEnableInteractive, so the import prompt can't fire. That's the same gap we just discussed, in its "already enabled" variant (not even disabled→re-enabled needed).
So the prompt only appears on a genuinely fresh repo (never configured). To actually exercise the feature you have two paths:
Test the command directly (works in this already-enabled repo):
entire import claude-code --dry-run # reports "Would import N turn(s) ..."
entire import claude-code # imports; "Imported N ..."
entire checkpoint list # imported entries show [imported]
entire checkpoint explain <id> # inspect one
entire checkpoint rewind --to <id> # should refuse: read-only / not rewindable
For this to find anything, there must be ~/.claude/projects/<sanitized path of this repo>/*.jsonl modified in the last month (sanitized = non-alphanumerics → -, so Users-ninawork-entire-devenv-test-new-claude).
Test the prompt: use a brand-new repo that has never had entire enable run, with at least one Claude session for it in the last month, then entire enable → prompt fires before "Ready."
One thing to confirm first — is the entire on your PATH the binary built from the import-existing-claude-projects branch? If it's a system-installed entire, none of this exists yet. Quick check:
which entire
entire import claude-code --help # errors "unknown command" if it's the old binary
Want me to build/install the branch binary, or walk through verifying the import in this repo?
make a new repo in /Users/ninawork/entire/devenv and set it up so I can test the import path
3w ago·16m·6 calls
Everything's set up and verified. The dry-run from the new repo finds 3 turns from 2 sessions.
Ready to test
Repo:/Users/ninawork/entire/devenv/importtest (fresh git repo, one commit, not yet enabled)
Branch binary:/Users/ninawork/entire/devenv/cli/entire ← use this, not the entire on your PATH (that's the homebrew cask 0.7.5 with no import command)
Fixtures: 2 fake Claude sessions (3 user-prompt turns total) in ~/.claude/projects/-Users-ninawork-entire-devenv-importtest/, dated within the last month
Convenience alias for the session:
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alias e=/Users/ninawork/entire/devenv/cli/entire
cd /Users/ninawork/entire/devenv/importtest
Test the enable prompt (the main thing — repo is fresh so it takes the full setup flow):
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e enable
You'll step through agent selection / telemetry, then hit:
Found 3 past Claude session turn(s) for this repo from the past month. Import them as local, read-only history? ...
Or test the command + read surfaces directly:
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e import claude-code # Imported 3 turn(s) from 2 session(s) (0 already imported)
e import claude-code # re-run → (3 already imported) ← idempotency
e checkpoint list # entries tagged [imported]
e checkpoint explain <id> # inspect one (cites the original transcript)
e checkpoint rewind --to <id> # refused: read-only / not rewindable
Cleanup when done:
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rm -rf /Users/ninawork/entire/devenv/importtest
rm -rf ~/.claude/projects/-Users-ninawork-entire-devenv-importtest
Two notes: e enable will install git hooks in the scratch repo pointing at the branch binary (fine for a throwaway). And since these fixtures are hand-written, if you'd rather test against real transcripts, run a couple of actual Claude Code sessions in importtest first, then e import claude-code.
Open a draft PR with the details we talked about earlier regarding the tradeoff / do it later segment. If you're not sure, ask me
3w ago
Open a draft PR with the details we talked about earlier regarding the tradeoff / do it later segment. If you're not sure, ask me.
But first, what is this:
● session-bbbb [temporary] Checkpoint: 829f1a07d903 06-25 14:08 (a6081d4) Checkpoint: 829f1a07d903
● session-aaaa [temporary] Checkpoint: 8aeeabd76964 06-25 14:08 (fb4d6e0) Checkpoint: 8aeeabd76964 06-25 14:08 (f25ec97) Checkpoint: d875fb5a0957
● 829f1a07d903 [imported] "Refactor the config loader to return an error instead of ..." 06-23 14:30 (829f1a0) Refactor the config loader to return an error instead of ...
● 8aeeabd76964 [imported] "Now add a test for it" 06-20 09:05 (8aeeabd) Now add a test for it
● d875fb5a0957 [imported] "Add a hello function to main.go" 06-20 09:00 (d875fb5) Add a hello function to main.go
➜ importtest git:(main) entire checkpoint explain 8aeeabd76964 no checkpoint or commit found matching "8aeeabd76964" ➜ importtest git:(main) ✗ entire checkpoint explain d875fb5a0957 no checkpoint or commit found matching "d875fb5a0957"
investigate why it can't find that checkpoint
3w ago·32m·80 calls
Now let me update the saved gap note to reflect the v1 design (so the PR write-up is accurate), then open the draft PR.
241ac12refactor(import): store imported checkpoints on v1, not a separate ref\
\
Imported checkpoints now live on entire/checkpoints/v1 (tagged Kind:imported)\
instead of a local-only entire/imports/v1 ref. They are redacted and pushed\
like normal checkpoints, which is what lights up server-side search/recap/UI.\
\
This collapses the read paths back to a single store and fixes two bugs that\
came from the two-ref design:\
- explain
Base directory for this skill: /Users/ninawork/.claude/skills/pr
Create Pull Request
1. Understand the Branch
Use origin/main as the comparison base for understanding branch scope. Do not use local main, a local PR target branch, or direct tree diffs such as git diff main or git diff origin/main for scope checks; those can include upstream-only changes and make this branch look like it reverted unrelated work.
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BASE=origin/main
MERGE_BASE=$(git merge-base HEAD "$BASE")
git log --oneline "$BASE"..HEAD
Read the commit history to understand the full scope of changes on this branch.
Review the changed file list from the merge base to the current working tree and confirm every changed file belongs to the PR's stated goal:
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git diff --name-status "$MERGE_BASE"
If unrelated files or commits are present, STOP and report them. Do not create a PR that bundles unrelated work.
2. Discover Project Verification Commands
Inspect the project to determine how to build, lint, and test. Collect candidate commands from these sources, then deduplicate them before running anything:
- Makefile — look for
build,lint,check,test,ci,verifytargets. Read the target recipes to understand what they run. - mise — check for
.mise.tomlor.mise/*.toml. Look for[tasks]definitions covering build, lint, test. If found, usemise run <task>. - CI workflows — read
.github/workflows/*.yml(or.gitlab-ci.yml, etc.) to understand required coverage. CI is the ground truth for what must pass, but CI matrix shards and CI-only wrappers are not automatically local verification commands. - README.md — look for "Development", "Contributing", "Building", or "Testing" sections that document how to run checks.
- Package manager conventions— detect from project files:
go.mod→go build ./...,go vet ./...,go test ./...; do NOT infer a lint command from Go alonepackage.json→ checkscriptsforbuild,lint,testCargo.toml→cargo build,cargo clippy,cargo testpyproject.toml/setup.py→ check for configured linters,pytest
If no lint command exists after checking all sources, state that explicitly instead of assuming an unavailable linter binary.
Reuse Cached Verification Discovery
Before rediscovering commands from scratch, choose an artifact directory using the AGENTS.md temporary artifact rule with agent name pfleidi-pr:
- Use
./tmp/pfleidi-pr/only when./tmp/already exists and is already ignored. - If no project-local artifact directory is available, do not use a verification cache by default. Ask before using
/tmp/pfleidi-pr/or modifying ignore files.
When an artifact directory is available, check for a verification cache at <artifact-dir>/verification-<repo-name>.md. The cache is only an input-token optimization; never commit it and never trust it blindly. If no artifact directory is available, perform normal discovery and skip writing the cache.
Reuse the cache only when all of these are true:
- It names the same worktree root and remote.
- It lists the verification source files it was based on, such as
Makefile,.mise.toml,.mise/*.toml, CI workflow files, README files, and package manifests. - Those source files still exist or are still intentionally absent.
git diff --name-only origin/main -- <source files>shows no branch changes to those source files.
If the cache is missing, stale, or incomplete, perform normal discovery. After discovery, update the cache with:
- Repository root and remote.
- Verification source files inspected.
- Selected command plan grouped by coverage area.
- Commands intentionally skipped as duplicates, aggregate/subtask overlaps, CI-only jobs, or too-slow shard matrices.
- Any assumptions, such as "no documented lint task found."
Deduplicate Verification Commands
Build a command plan by coverage area, not by source. Do not run every command discovered.
- Run at most one command for each coverage area: build/compile, lint/static analysis, unit/core tests, integration tests, e2e/smoke tests.
- Prefer documented local developer tasks over CI-specific commands when they cover the same area.
- Do not run both an aggregate task and its constituent tasks. For example, if
mise run checkruns lint and tests, either runmise run checkalone or run the narrower lint/test tasks, not both. - Treat CI matrix shards as duplicated slices of one suite. Do not run every
*:shard:*command locally when an unsharded local task covers the suite. - If CI has only sharded commands and no local equivalent, ask before running all shards. Otherwise, run the smallest representative or changed-scope test command and note that the full shard matrix remains for CI.
- Do not run CI-only canary/e2e jobs locally by default. Run them only when the PR changes that surface, when the user asks, or when the project documents them as required local PR verification.
Log which sources you used, which duplicate/CI-only commands you skipped, and what commands you will run. If the deduplication rules require asking before slow CI-only coverage, STOP for confirmation; otherwise immediately proceed to step 3.
3. Run Verification and Auto-Fix
Run the deduplicated command plan in the fewest safe batches. Prefer background processing for independent validation tasks instead of running everything sequentially.
The commands should cover, at minimum:
- Build — the project compiles without errors
- Lint / static analysis — no lint warnings or static analysis failures
- Tests — the selected local test coverage passes without duplicating CI shards or aggregate/subtask combinations
Use the exact commands, flags, and build tags found in step 2 for the commands you selected. Do not invent your own flags.
Parallel Verification Rules
Partition the selected commands into dependency-safe batches before running them:
- Run mutating commands alone and before validators that depend on their output. This includes formatters, generators, codegen, migrations, package installation, or commands known to update snapshots, lockfiles, generated files, caches in the repo, or test fixtures.
- Run dependent commands after their prerequisite batch passes. For example, do not start tests that require generated code until generation succeeds.
- Run independent read-only validation commands concurrently in the same background batch. Build, lint/static analysis, typecheck/vet, and unit tests can usually share a batch when they do not mutate the working tree and do not require the same exclusive service, port, database, or fixture directory.
- Keep integration, e2e, or service-backed commands separate unless the project documents that they are parallel-safe.
- If unsure whether two commands are independent, run them sequentially. Correctness of validation beats speed.
For each background batch:
Start every command from the same working-tree state.
Run each selected validator directly, for example
mise run lint,go test ..., ornpm test -- .... Do not wrap validators insh -c, shell redirection,tee, command separators, or pipelines solely to capture logs; that defeats command-prefix approvals and causes extra permission prompts.Capture each command's stdout, stderr, exit status, and command line from the tool output separately.
While the batch is running, do not edit files, start auto-fixes, or treat partial output as a result.
Wait for every command in the batch to finish, then show verification as a compact table:
| Command | Exit | Relevant output |
|---|---|---|
go test ./pkg/foo -run TestBar -count=1 |
0 | Short success excerpt. |
For failures or short outputs, show complete output in the relevant-output column or immediately below the table. For long successful outputs, show the relevant excerpt and state that the rest was truncated.
If any command in the batch fails, treat the whole batch as failed for the fix loop. Results from other commands in that stale batch may help diagnose, but they do not count as passing verification after files change.
On Failure: Fix and Re-verify
If any command fails, do NOT stop. Instead:
- Read the error output and identify every failure
- Fix all issues — apply the minimal changes needed to make the failing command pass
- Re-run the deduplicated verification plan from the top, using the same safe batching rules (not just the previously failing command — fixes can introduce new issues)
- Show the updated verification table again, including complete failure output for any command that still fails
Repeat this cycle until all commands pass. Cap at 3 fix attempts. If verification still fails after 3 rounds, STOP and present the remaining failures to the user with full failure output — do not keep looping.
4. Prompt for Commit
After all verification passes, check for uncommitted changes:
1
git status --short
If there are uncommitted changes (from auto-fixes in step 3):
- Show the diff of all uncommitted changes
- Propose a semantically correct commit message using the subject-plus-context style from
AGENTS.md. The message must describe the net fix (e.g., "fix lint warnings in config parser" not "fix issues found during PR prep"). - STOP and wait for user approval. The user may edit the message, split the changes, or commit themselves.
If the user approves the commit, do not rerun the full verification suite before committing unless files changed after step 3. If another sanity check is needed, use the commit-time verification scope from AGENTS.md: lint tasks, a fast compile/build check, and tests directly related to the changed code only.
If there are no uncommitted changes, proceed directly to step 5.
5. Push the Branch
1
git push origin HEAD
If the branch has no upstream yet, use git push -u origin HEAD.
6. Create the PR
Determine a concise PR title (under 70 characters) from the commit history and diff.
Use the same branch-only comparison from step 1 ($MERGE_BASE to the current working tree) when deriving the title, PR body, changed-file list, and mostly-Markdown detection. Do not use local main or direct git diff origin/main output for PR description decisions.
Write the PR body with:
- What this PR does and why
- How it was implemented (brief, not exhaustive)
- Any migration, deployment, or reviewer notes if applicable
- For mostly Markdown PRs, a Rendered Markdown section linking to the changed Markdown files rendered on GitHub
Create the PR:
1
gh pr create --draft --title "<title>" --body "<body>"
Create a ready-for-review PR only when the user explicitly asks for it with wording such as "non-draft", "ready for review", or "publish it as ready". In that case, omit --draft.
Show the PR URL and STOP.
Rules
- Do NOT add "Generated with Claude Code" or any AI attribution anywhere
- Do NOT summarize what you just did after showing the URL
- Treat a PR as "mostly Markdown" when more than half of changed files are Markdown (
.md,.mdx,.markdown) or the main review target is Markdown documentation. In that case, include GitHub rendered links for the changed Markdown files using the pushed branch, e.g.https://github.com/<owner>/<repo>/blob/<branch>/<path>.md. Link all changed Markdown files when the list is short; for large docs PRs, link the main entry points or most important changed files. - If the user provides a title or description, use it verbatim instead of generating one, but append rendered Markdown links for mostly Markdown PRs unless the user explicitly says not to modify the description.
- If the PR description contains checklist items (
- [ ]), check them (- [x]) if and only if the corresponding step was actually verified during this workflow (e.g., build passed, tests passed, lint passed). Do NOT check items that were not verified. Do NOT leave items unchecked if they were verified.
ARGUMENTS: draft PR. Title: "Import existing Claude Code transcripts". Body must include a "Tradeoffs / known limitations (do later)" section covering: (1) the enable-time import prompt only fires on fresh setup, not on re-enable (sessions made while Entire was disabled aren't auto-offered; entire import claude-code imports them manually); (2) imported history is pushed to the backend like normal checkpoints (privacy note: up to a month of old conversations sync). Also note imported checkpoints are read-only / not rewindable.
3w ago·34.6s·2 calls
Verification running in the background. I'll create the PR once it's green.
3w ago·7m·3 calls
Draft PR created: https://github.com/entireio/cli/pull/1527
Instead of cmd/entire/cli/importclaude/ with importclaude hardcoded, the import package should be able to ultimately handle other agents as well. It's only Claude for now
3w ago·25m·45 calls
Both tasks done.
1. PR description updated ( #1527) to match the current design: generic agentimport package, imports on entire/checkpoints/v1 (pushed), hidden command only (no enable prompt), with a refreshed "Tradeoffs / known limitations" section (manual import, push/privacy note, read-only, Claude-only).
2. Review comments addressed — all from cursor[bot] and Copilot (no human comments):
- Already resolved by the refactor: the four prompt-related findings (never-pushes wording,
RunWithContext, cancel handling, slow enable counting) — the prompt was removed; theimportclaudefiles with staleentire/imports/v1comments were rewritten underagentimport. - Fixed in
c4bfa4f:checkpoint listlimit — live (commit-linked + temporary) points are capped first; imported are appended with their own bounded budget so they can't evict recent checkpoints.- Per-turn redaction → redact once per session file (lazy; dry-run/skipped files pay nothing).
- Stale "local-only" / "entire/imports/v1" wording corrected across
KindImported,RewindPoint.Imported, and bothapi/checkpoint``Importedfield comments.
Verified: mise run lint (0 issues), agentimport + api/checkpoint unit tests, and the end-to-end integration test all pass. Pushed, and posted a comment on the PR mapping each finding to its resolution.
One note: these were all bot reviews — no human review comments to triage yet.
5733491refactor(import): generalize import package across agents (Claude first)\
\
Renames cmd/entire/cli/importclaude -> cmd/entire/cli/agentimport with an\
Importer seam (Discover + SplitTurns) and a static set of supported agents,\
so other agents can be added without touching the orchestration. Claude Code\
is the only implementation today.\
\
Also drops the enable-time import prompt; importing is a hidden command only\
(entire import
c4bfa4ffix(import): address PR review feedback\ - explain: cap live (commit-linked + temporary) checkpoints to the limit\ before appending imported ones, so a large import can't evict recent\ checkpoints from 'checkpoint list'\ - agentimport: redact each session transcript once per file instead of once\ per turn (O(files) not O(turns))\ - correct stale 'local-only'/'entire/imports/v1' wording in Kind/flag/field\ comments — imported checkpoints live on v1 and push like normal checkpoints\ \ Co-Authored-By: Claude Opus 4.8 noreply@anthropic.com\ Entire-Checkpoint: f553c0e9a83c+36/-18
Make additional commits to import in /Users/ninawork/entire/devenv/importtest
3w ago·3m·3 calls
Done — imported 3 additional turns into importtest from two new fixture sessions.
I read "additional commits to import" as more imported checkpoints, so I added two new Claude session fixtures and imported them. The dry-run correctly showed only the 3 new turns (the earlier 3 were skipped — idempotency holding), and checkpoint list now shows 6 imported checkpoints, newest-first by their original timestamps:
| Checkpoint | Date | Prompt |
|---|---|---|
4971852b32d4 |
06-25 | Add structured logging with slog |
7af4a47afc3f |
06-24 | Return JSON with a version field |
e51c765ce9f1 |
06-24 | Wire up a /healthz endpoint |
829f1a07d903 |
06-23 | Refactor the config loader… |
8aeeabd76964 |
06-20 | Now add a test for it |
d875fb5a0957 |
06-20 | Add a hello function to main.go |
If you actually meant something different — e.g. real git commits in importtest (to get commit-linked checkpoints alongside imported ones, exercising the list-limit/ordering fix), or generating a large batch (>20 turns) to stress that limit — tell me which and I'll set it up. Real commit-linked checkpoints need a live agent session firing the hooks, so I'd use the Vogon fake agent or walk you through it.
➜ importtest git:(main) ✗ entire import claude-code Imported 0 turn(s) from 4 session(s) (6 already imported). ➜ importtest git:(main) ✗
I just want more to import
3w ago·1m·5 calls
Added 4 more fixture sessions (8 new turns), left unimported so you have a backlog. Dry-run confirms:
Would import 8 turn(s) from 8 session(s) (6 already imported).
Run entire import claude-code in importtest whenever you want to pull them in. The new sessions span 06-12 → 06-21 (varied 1–3 turns each, mixed models). Want me to keep topping it up, or add a larger batch (e.g. enough to exceed the 20-entry checkpoint list limit)?
how do I test search
3w ago·1m·1 call
Confirmed: both entire search and entire checkpoint search are the same command (checkpoint search just calls newSearchCmd()), and it's server-side — it queries the Entire search service over HTTP and requires auth. There is no local search of checkpoints. That's the key thing for testing.
What search needs
For a checkpoint (imported or normal) to show up in entire search, it has to be in the backend and indexed, which means:
- Logged in —
entire login(GitHub device flow). Check withentire auth status. - The repo is pushed to the backend — the
entire/checkpoints/v1branch (which now holds imported checkpoints too) must reach the Entire backend. That happens via the pre-push hook ongit push, or a configured checkpoint remote. You sawPushing entire/checkpoints/v1 to checkpoint remoteearlier in the cli repo — that's exactly this. - Indexing — there's typically a short lag after push before results appear.
Why importtest won't work as-is
The importtest scratch repo has no git remote and isn't registered with a backend, so its entire/checkpoints/v1 (and the imported checkpoints on it) never get pushed or indexed. Search scoped to that repo will return nothing — not a bug, just nothing to search.
Two ways to actually test it
A. Use a repo that's already connected (recommended): in one of your real enabled+pushed repos, run entire import claude-code, let the next git push sync the v1 branch, wait for indexing, then:
entire search "your prompt text" # scoped to current repo
entire search --json "..." # machine-readable
entire search --all-repos "..." # across all your repos
# inline filters also work: author:<name> date:<week|month> repo:<owner/name> branch:<name>
Imported turns should surface by their prompt text (e.g. "Add structured logging with slog").
B. Wire importtest to a real remote: give it a GitHub origin, register/push so the backend ingests it, then search. More setup, but keeps it isolated from your real repos.
Per your standing rule I won't run import/push against your real repos. Want me to set up B — add a GitHub remote to importtest and push so its imported checkpoints get indexed — or are you set to test on a connected repo yourself? (Either way, run entire auth status first to confirm you're logged in to the right core.)
Take a look at the review comments on https://github.com/entireio/cli/pull/1527. Don't publish anything, just review them locally here.
3w ago·5m·3 calls
Here's my local read of the review on PR #1527. The bot comments (cursor/Copilot on the old 241ac1231) are all already addressed by my fixes + the later 1747e427b ("provenance privacy" — transcript_path became transcript_file basename, content hash is over the redacted slice). The substance now is three comments from pfleidi (the maintainer) on 3ade5dfda, and they're all about the metadata additions. My assessment:
1. metadata.go:156 — "Provenance for non-imported checkpoints too?"
Are these import-specific or are we planning to extend this to regular checkpoints?
Already answered — the user (computermode) replied "import specific for now... the option is there." No code action. Fine as-is.
2. metadata.go:287 — "Is the Imported bool redundant with Kind/Provenance?"
we could check
Kind == "imported"and/or the existence of Provenance
Partially fair, but the bool is justified. The key fact: Kind and Provenance live on Metadata (per-session), while Imported lives on CheckpointSummary (per-checkpoint) and is surfaced on CheckpointInfo (what List() returns). Every consumer reads it at the per-checkpoint level where Kind/Provenance aren't available:
rewind.go:436(in.Importedfrom aCheckpointInfo)explain.go:2204(info.ImportedingetImportedRewindPoints)explain.go:2737(list[imported]label)common.go:333(propagate to strategyCheckpointInfo)
Dropping the bool would force each of those to open every session's metadata.json to read Kind. It also mirrors the existing HasReview/HasInvestigation umbrella flags on CheckpointSummary (persistent.go:501-523) — same pattern, same reason.
Recommendation: keep it; reply with that rationale (per-session Kind vs per-checkpoint summary, consistent with the existing review/investigate umbrella flags). Not a code change.
3. metadata.go:17 — "Provenance is written but never read"
we're writing it to
metadata.jsonbut I can't find anywhere we read it
Correct, and it's the one real gap. Grep confirms Provenance is only ever written (persistent.go:467, built in agentimport.go:207) — nothing in the CLI reads it back. Worse, the doc comment (metadata.go:14-16) overstates:
- "so explain/search can cite the original transcript" →
explaindoes not read or display provenance. - "re-import stays idempotent" → idempotency uses the derived checkpoint ID (
sha256(sessionID+turnUUID)), not provenance/content_hash.
So today it's write-only metadata for external/future readers. Two honest ways to resolve:
- (a) Make it earn its place (my recommendation): have
explainshow a provenance line for imported checkpoints ("imported from<transcript_file>, session<id>, turn<uuid>"). Small change, makes the field used, and delivers the "honest citation" the comment promises. Then fix the doc to drop the idempotency claim. - (b) Keep as write-only but fix the doc to say it's recorded for external readers / future use, and remove the inaccurate explain/idempotency claims.
I'd go with (a) — it directly answers pfleidi and the field stops being dead weight.
Net: #1 done; #2 is a "keep + explain why" reply; #3 wants an actual change (wire provenance into explain, or at minimum correct the doc comment). Nothing published. Want me to implement (a) for #3 and draft reply text for #2 — or just the doc-comment fix (b)?
It should be idempotent though, that's a regression if it's not anymore
3w ago·53.6s·1 call
Idempotency is intact and tested — confirmed in code and behavior:
Mechanism (agentimport.go``Run):
existing= every checkpoint ID already onentire/checkpoints/v1(stores.Persistent.List).- Each turn's ID is deterministic:
cid = DeriveCheckpointID(sessionID, turnUUID)=sha256(sessionID + "/" + turnUUID). - If
existing[cid]→ skip (TurnsSkipped++).
So re-running import re-derives the same IDs and skips anything already present. You saw it live earlier — Imported 0 turn(s) ... (6 already imported) — and the integration test asserts the re-run imports 0 / skips all.
The thing I flagged is narrower and not a behavior change: the Provenance doc comment says provenance is what keeps re-import idempotent. That's just inaccurate wording — idempotency comes from the derived checkpoint ID, and content_hash (in provenance) is never read. Correcting that comment removes a false claim; it does not remove idempotency.
So no regression. To be precise about what content_hash does today: nothing — it's written, never read. That's the actual subject of pfleidi's "written but never read" comment.
One real consequence worth your call: because dedup is purely ID-based (sessionID+turnUUID), if a turn's content ever changed under the same UUID, re-import would skip it (no update). For append-only transcripts that never happens, so it's fine — but if you wanted "re-import refreshes changed turns," content_hash is exactly the hook to make it do so (compare stored hash, rewrite on mismatch). That would make provenance read and give content-level idempotency on top of ID-level.
Want me to (a) just fix the doc comment to credit the derived ID, or (b) also wire content_hash into the dedup so changed turns refresh? (a) keeps current behavior; (b) makes provenance used and upgrades idempotency from ID-level to content-level.
so why was provenance included
3w ago·41.7s
Honest answer: it was included on the strength of the issue-thread recommendation, for two intended purposes — neither of which the implementation actually ended up using.
Where it came from: In #1336, a commenter (Necmttn) recommended persisting per-turn source path, line range, session/turn UUIDs, content hash, and import version, arguing it gives (a) idempotency and (b) lets explain/search cite the original JSONL honestly ("imported history is evidence, live checkpoints are restorable state"). That got carried into the spec and then the metadata contract.
What actually happened in code:
- (a) Idempotency was solved more simply with the deterministic checkpoint ID — provenance wasn't needed for it.
- (b) The "cite the original transcript" use was never wired up —
explaindoesn't read provenance.
So provenance is currently write-only: persisted to metadata.json, read by nothing. That's exactly why pfleidi's comment lands, and honestly your instinct is right to question it — as built, it's speculative ("we might want it for external readers / a future explain citation"), not load-bearing.
So there are really three defensible positions, and it's your call:
- Trim it — YAGNI. Drop the
Provenancestruct/field; idempotency doesn't need it and nothing reads it. Smallest, most honest surface. - Make it earn its place — wire
explainto show "imported from<transcript_file>, session<id>" (and optionally usecontent_hashfor content-level re-import). Then it's used and matches its original purpose. - Keep as documented external-reader metadata — leave it written, fix the doc to stop claiming idempotency/citation, and note it's for downstream consumers.
Given it's a brand-new field with no reader, I'd lean 1 (trim) unless you have a concrete near-term consumer in mind (server-side citation, content-refresh), in which case 2. Which way do you want to go?
Let's remove it for now
3w ago·9m·23 calls
Done — Provenance removed and committed locally (b41cea8ee), not pushed.
What I removed:
- The
Provenancestruct and theProvenancefield onWriteOptionsandMetadata(api/checkpoint/metadata.go) - The
Provenancealias (checkpoint/aliases.go), the writer line (persistent.go), and the build-up inagentimport.go - Now-dead carriers:
Turn.ParentUUID, theimportVersionconstant, and thecontentHashhelper added by the privacy commit - The
TestProvenanceRoundTripstest and theProvenancefield inpersistent_imported_test.go
Kept:Kind:"imported" and the Imported flag (still read by the rewind guard, getImportedRewindPoints, the [imported] label, and the generate guard).
Verified:mise run lint (0 issues); agentimport, api/checkpoint, checkpoint unit tests, and the end-to-end integration test all pass. Idempotency is unaffected — still keyed on the deterministic checkpoint ID.
This addresses pfleidi's "written but never read" comment directly. Still open for your call:
- #2 (
Importedbool redundant withKind?) — I'd keep it (per-sessionKindvs per-checkpoint summary flag, mirroringHasReview/HasInvestigation); that's a reply, not a code change. - Want me to push this commit to the PR, and/or draft reply text for pfleidi's threads?
1f63eb4refactor(import): drop unused Provenance from imported checkpoints\ \ Provenance was written to metadata.json but never read: idempotency comes from\ the deterministic checkpoint ID (sha256(sessionID/turnUUID)), and explain never\ cited it. Removing the Provenance struct/field and the now-dead Turn fields\ (ParentUUID) and import-version constant. Imported checkpoints keep Kind and the\ Imported flag.\ \ Co-Authored-By: Claude Opus 4.8 noreply@anthropic.com\ Entire-Checkpoint: 4315ab0b3062+15/-108